RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 IL19Q9UHD0 177 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 OR52A1Q9UKL2 312 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 RHBDD3Q9Y3P4 386 aa12.01□□□□□ -0.49
SHKBP1-217ENST00000598558 A0A0U1RQV5 110 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 LOC100289279A0A1B0GTE1 492 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 DAPL1A0PJW8 107 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 FAM20BO75063 409 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 SULT1C4O75897 302 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 KRT8P05787 483 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 KIR3DL2P43630 455 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 TMEM33P57088 247 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 CDONQ4KMG0 1287 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 ZMAT1Q5H9K5 638 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 AVPI1Q5T686 147 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 PRAMEF6Q5VXH4 476 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 CATSPERDQ86XM0 798 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 ELMOD2Q8IZ81 293 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 ACBD7Q8N6N7 88 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 ZNF420Q8TAQ5 688 aaPredicted RBP12□□□□□ -0.49
SHKBP1-217ENST00000598558 CCL17Q92583 94 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 GGHQ92820 318 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 GCM1Q9NP62 436 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 FGF20Q9NP95 211 aaPredicted RBP12□□□□□ -0.49
SHKBP1-217ENST00000598558 GPR84Q9NQS5 396 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 ACOXLQ9NUZ1 547 aa12□□□□□ -0.49
SHKBP1-217ENST00000598558 RPL36Q9Y3U8 105 aaKnown RBP12□□□□□ -0.49
SHKBP1-217ENST00000598558 E9PI62 339 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 LOC110117498-PIK3R3F6TDL0 507 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 H0YJX3 145 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 P2RY10O00398 339 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 PPIHO43447 177 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 XPNPEP2O43895 674 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 TACSTD2P09758 323 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 LIMS3P0CW19 117 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 LIMS4P0CW20 117 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 USF1P22415 310 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 GPR6P46095 362 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 NANOS3P60323 173 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 RAB40BQ12829 278 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 IL18R1Q13478 541 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 GALEQ14376 348 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 MPPED2Q15777 294 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 ZNF829Q3KNS6 432 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 DMRTC1Q5HYR2 192 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 WDR86Q86TI4 376 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 PELI1Q96FA3 418 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 FAM71F1Q96KD3 344 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 EGLN1Q9GZT9 426 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 RGCCQ9H4X1 137 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 OPA3Q9H6K4 179 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 ERVK13-1Q9NX77 482 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 MRPL15Q9P015 296 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 GNG8Q9UK08 70 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 GTF2A1LQ9UNN4 478 aa11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 RRP15Q9Y3B9 282 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 TEP1Q99973 2627 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-217ENST00000598558 SNTNA6NMZ2 147 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 C3orf80F5H4A9 247 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 H3BSH0 61 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 J3QLW9 94 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 LMX1BO60663 402 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 ZNF19P17023 458 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 TNFSF4P23510 183 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 DDOSTP39656 456 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 CD200P41217 278 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 ETV1P50549 477 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 ACTC1P68032 377 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 ACTA1P68133 377 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 OR8G1Q15617 311 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 ODF4Q2M2E3 257 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 TMEM249Q2WGJ8 235 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 WDR38Q5JTN6 314 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 FAM201AQ5SY85 155 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 Q6ZSR3 168 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 KRT74Q7RTS7 529 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 MOGAT3Q86VF5 341 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 C11orf53Q8IXP5 236 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 RDH10Q8IZV5 341 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 C8orf59Q8N0T1 100 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 PLPP7Q8NBV4 271 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 SETD9Q8NE22 299 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 C4orf36Q96KX1 117 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 ADAT1Q9BUB4 502 aaKnown RBP11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 ALG8Q9BVK2 526 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 NARFLQ9H6Q4 476 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 TMEM106BQ9NUM4 274 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 FRRS1LQ9P0K9 344 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 CLEC2DQ9UHP7 191 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 WIPI2Q9Y4P8 454 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 PCDHGB5Q9Y5G0 923 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 SNX5Q9Y5X3 404 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 HSPE1-MOB4S4R3N1 261 aa11.98□□□□□ -0.49
SHKBP1-217ENST00000598558 A6NIN4 97 aa11.97□□□□□ -0.49
SHKBP1-217ENST00000598558 ZNF850A8MQ14 1090 aa11.97□□□□□ -0.49
SHKBP1-217ENST00000598558 GMDSO60547 372 aa11.97□□□□□ -0.49
SHKBP1-217ENST00000598558 ZNF205O95201 554 aa11.97□□□□□ -0.49
SHKBP1-217ENST00000598558 PTBP3O95758 552 aaKnown RBP11.97□□□□□ -0.49
SHKBP1-217ENST00000598558 FADS2O95864 444 aaKnown RBP11.97□□□□□ -0.49
SHKBP1-217ENST00000598558 CYB5R3P00387 301 aaPredicted RBP11.97□□□□□ -0.49
SHKBP1-217ENST00000598558 IGHV4-31P0DP07 118 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms