RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PRAMEF6Q5VXH4 476 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 ZNF771Q7L3S4 317 aaPredicted RBP11.67□□□□□ -0.54
UPF1-205ENST00000598209 SSX6Q7RTT6 188 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 KLBQ86Z14 1044 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 CSNK2A3Q8NEV1 391 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 OR2T27Q8NH04 317 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 RAB39BQ96DA2 213 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 LYZL4Q96KX0 146 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 TMEM160Q9NX00 188 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 UBAP1Q9NZ09 502 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 ZNF391Q9UJN7 358 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.67□□□□□ -0.54
UPF1-205ENST00000598209 ARHGAP32A7KAX9 2087 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 DOCK11Q5JSL3 2073 aa11.67□□□□□ -0.54
UPF1-205ENST00000598209 NF1P21359 2839 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 NAV3Q8IVL0 2385 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.66□□□□□ -0.54
UPF1-205ENST00000598209 LOC100130705A0A1B0GUX0 176 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 A0A1W2PQL4 384 aaPredicted RBP11.66□□□□□ -0.54
UPF1-205ENST00000598209 DVL1P1P54792 670 aaPredicted RBP11.66□□□□□ -0.54
UPF1-205ENST00000598209 MFGE8Q08431 387 aaPredicted RBP11.66□□□□□ -0.54
UPF1-205ENST00000598209 ZMYND11Q15326 602 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 OR8B8Q15620 311 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 MPPED2Q15777 294 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 OCLNQ16625 522 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 ZNF181Q2M3W8 571 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 MEDAGQ5VYS4 303 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 GALNT4Q8N4A0 578 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 SPERTQ8NA61 448 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 OR10H4Q8NGA5 316 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 ERGIC1Q969X5 290 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 PBOV1Q9GZY1 135 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 LPAR2Q9HBW0 351 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 UFSP2Q9NUQ7 469 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 FAM118AQ9NWS6 357 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 AASSQ9UDR5 926 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 MRM2Q9UI43 246 aaKnown RBP11.66□□□□□ -0.54
UPF1-205ENST00000598209 RHBDD3Q9Y3P4 386 aa11.66□□□□□ -0.54
UPF1-205ENST00000598209 WNK2Q9Y3S1 2297 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 A0A0U1RQV5 110 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 LRRC30A6NM36 301 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 LOC110117498-PIK3R3F6TDL0 507 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 FAM20BO75063 409 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 SRSF10O75494 262 aaKnown RBP11.65□□□□□ -0.54
UPF1-205ENST00000598209 PTBP3O95758 552 aaKnown RBP11.65□□□□□ -0.54
UPF1-205ENST00000598209 PNPP00491 289 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 KRT8P05787 483 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 MSMBP08118 114 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 IRF2P14316 349 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 ACKR3P25106 362 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 GNALP38405 381 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 MTNR1AP48039 350 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 MZT1Q08AG7 82 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 SNCBQ16143 134 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 LRRC36Q1X8D7 754 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 CHRFAM7AQ494W8 412 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 TMEM155Q4W5P6 130 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 LPCAT4Q643R3 524 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 PLEKHG7Q6ZR37 379 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 GLCCI1Q86VQ1 547 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 LRRC28Q86X40 367 aaPredicted RBP11.65□□□□□ -0.54
UPF1-205ENST00000598209 ENTHD1Q8IYW4 607 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 C1orf87Q8N0U7 546 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 SPICQ8N5J4 248 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 OR11L1Q8NGX0 322 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 OR8S1Q8NH09 359 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 OR51F2Q8NH61 342 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 Q8TCH9 128 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 PPP1R14AQ96A00 147 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 RNFT2Q96EX2 444 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 RDH12Q96NR8 316 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 PAPOLGQ9BWT3 736 aaKnown RBP11.65□□□□□ -0.54
UPF1-205ENST00000598209 PPP1R3EQ9H7J1 279 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 FN3KRPQ9HA64 309 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 SMPD3Q9NY59 655 aaPredicted RBP11.65□□□□□ -0.54
UPF1-205ENST00000598209 NUFIP1Q9UHK0 495 aaKnown RBP11.65□□□□□ -0.54
UPF1-205ENST00000598209 CDC42EP3Q9UKI2 254 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 GTF2A1LQ9UNN4 478 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 R4GMQ9 66 aa11.65□□□□□ -0.54
UPF1-205ENST00000598209 SNTNA6NMZ2 147 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 DLGAP1O14490 977 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 SLC16A6O15403 523 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 MPZL2O60487 215 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 RPP14O95059 124 aaKnown RBP11.64□□□□□ -0.55
UPF1-205ENST00000598209 ZNF205O95201 554 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 GRPP07492 148 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 GABRB1P18505 474 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 PEX2P28328 305 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 MDH2P40926 338 aaKnown RBP11.64□□□□□ -0.55
UPF1-205ENST00000598209 CR1LQ2VPA4 569 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 FAM201AQ5SY85 155 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 BCL2L15Q5TBC7 163 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 COMMD2Q86X83 199 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 MUC20Q8N307 709 aaPredicted RBP11.64□□□□□ -0.55
UPF1-205ENST00000598209 FTMTQ8N4E7 242 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 KLHL36Q8N4N3 616 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 YIPF7Q8N8F6 280 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 PLPP7Q8NBV4 271 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 ZNF555Q8NEP9 628 aa11.64□□□□□ -0.55
UPF1-205ENST00000598209 RHOXF1Q8NHV9 184 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms