RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MYO7BQ6PIF6 2116 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 hCG_38984A0A1B0GV85 526 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 C5orf63A6NC05 138 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 ANXA2P2A6NMY6 339 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 NOTOA8MTQ0 251 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 C1QL1O75973 258 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 ALX3O95076 343 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 FAM157BP0CG42 384 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 GCH1P30793 250 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 TGFBR1P36897 503 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 SELENOVP59797 346 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 OR8B8Q15620 311 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 GLT8D1Q68CQ7 371 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 UTS2BQ765I0 119 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 CDH26Q8IXH8 852 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 ZNF101Q8IZC7 436 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 OR1M1Q8NGA1 313 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 CPNE2Q96FN4 548 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-209ENST00000597423 HIST1H2AAQ96QV6 131 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 OR51B6Q9H340 312 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 TMEM138Q9NPI0 162 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 TAS2R4Q9NYW5 299 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 A3GALT2U3KPV4 340 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 V9GY05 133 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 EPG5Q9HCE0 2579 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 ESPL1Q14674 2120 aa13.15□□□□□ -0.3
TRIM28-209ENST00000597423 ZNF816-ZNF321PA0A0X1KG74 233 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 ANKRD30BLA7E2S9 258 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 MAS1P04201 325 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 ALDOBP05062 364 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 THBDP07204 575 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 IGFBP3P17936 291 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-209ENST00000597423 PRKACBP22694 351 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 BDKRB2P30411 391 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 GLRXP35754 106 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 HNRNPA0Q13151 305 aaKnown RBP13.14□□□□□ -0.31
TRIM28-209ENST00000597423 MOGQ16653 247 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 CLVS2Q5SYC1 327 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 MZT2AQ6P582 158 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 RFPL4BQ6ZWI9 263 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 MYPOPQ86VE0 399 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-209ENST00000597423 NKAIN3Q8N8D7 197 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 ACOT12Q8WYK0 555 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 PIGTQ969N2 578 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 HAVCR1Q96D42 359 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 CMBLQ96DG6 245 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 ADAT3Q96EY9 351 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-209ENST00000597423 MRI1Q9BV20 369 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 MMP27Q9H306 513 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 ABCB9Q9NP78 766 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 NPAP1Q9NZP6 1156 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 KCNN3Q9UGI6 736 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 SLC7A11Q9UPY5 501 aa13.14□□□□□ -0.31
TRIM28-209ENST00000597423 AK6Q9Y3D8 172 aaKnown RBP13.14□□□□□ -0.31
TRIM28-209ENST00000597423 ANKRD61A6NGH8 418 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 CD300LBA8K4G0 201 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 SULT1B1O43704 296 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 CST4P01036 141 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 NRASP01111 189 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 CLEC2LP0C7M8 214 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 ATF1P18846 271 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 CALCRP30988 508 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 HLXQ14774 488 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-209ENST00000597423 CNN3Q15417 329 aaKnown RBP13.13□□□□□ -0.31
TRIM28-209ENST00000597423 ZNF404Q494X3 552 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 RGS7BPQ6MZT1 257 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-209ENST00000597423 LRRTM1Q86UE6 522 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 MCFD2Q8NI22 146 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 SLC25A40Q8TBP6 338 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 KCTD12Q96CX2 325 aaKnown RBP13.13□□□□□ -0.31
TRIM28-209ENST00000597423 SOX7Q9BT81 388 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 OR2J1Q9GZK6 312 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 CHST5Q9GZS9 411 aa13.13□□□□□ -0.31
TRIM28-209ENST00000597423 TRAV8-7A0A075B6U6 113 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 DPRXA6NFQ7 191 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 A6NIN4 97 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 GMDSO60547 372 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 LMX1BO60663 402 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 CD3EP07766 207 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 FAHP16930 419 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 CAPZA1P52907 286 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 TFF3Q07654 80 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 DYNC1I2Q13409 638 aaKnown RBP13.12□□□□□ -0.31
TRIM28-209ENST00000597423 SNTB2Q13425 540 aaKnown RBP13.12□□□□□ -0.31
TRIM28-209ENST00000597423 BEX5Q5H9J7 111 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 IDNKQ5T6J7 187 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 MBNL2Q5VZF2 373 aaKnown RBP13.12□□□□□ -0.31
TRIM28-209ENST00000597423 ZNF529Q6P280 563 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 SLC22A25Q6T423 547 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 LINC00299Q6ZSB3 139 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 C22orf34Q6ZV56 151 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 KRT74Q7RTS7 529 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 PIAS4Q8N2W9 510 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-209ENST00000597423 NUP37Q8NFH4 326 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 LINC01560Q8TB33 94 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 KLF14Q8TD94 323 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-209ENST00000597423 PIGCQ92535 297 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 SPSB1Q96BD6 273 aa13.12□□□□□ -0.31
TRIM28-209ENST00000597423 MARS2Q96GW9 593 aaKnown RBP13.12□□□□□ -0.31
TRIM28-209ENST00000597423 SLC22A4Q9H015 551 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms