RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 LIPHQ8WWY8 451 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 G6PC2Q9NQR9 355 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 MED9Q9NWA0 146 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 THADAQ6YHU6 1953 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 HEXBP07686 556 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 AMY2BP19961 511 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 OR3A4PP47883 348 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 NDUFA6P56556 154 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 CLDN6P56747 220 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 ELAVL1Q15717 326 aaKnown RBP13.58□□□□□ -0.24
UPF1-204ENST00000596842 ETFRF1Q6IPR1 90 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 DNM1P34Q6PK57 102 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 TIPARPQ7Z3E1 657 aaKnown RBP13.58□□□□□ -0.24
UPF1-204ENST00000596842 ZNF775Q96BV0 537 aaPredicted RBP13.58□□□□□ -0.24
UPF1-204ENST00000596842 PBOV1Q9GZY1 135 aa13.58□□□□□ -0.24
UPF1-204ENST00000596842 ALX4Q9H161 411 aaPredicted RBP13.58□□□□□ -0.24
UPF1-204ENST00000596842 MSGN1A6NI15 193 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 ALG1L2C9J202 215 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 SNAPC5O75971 98 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 ACTL6AO96019 429 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 MT-ATP6P00846 226 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 CALCRP30988 508 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 MRPS21P82921 87 aaKnown RBP13.57□□□□□ -0.24
UPF1-204ENST00000596842 HSF1Q00613 529 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 TGIF1Q15583 401 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 FAM166AQ6J272 317 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 DNM1P46Q6ZS02 220 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 OR5D14Q8NGL3 314 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 OR2AJ1Q8NGZ0 328 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 OR51F2Q8NH61 342 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 FAM131CQ96AQ9 280 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 ZNF705GA8MUZ8 300 aaPredicted RBP13.57□□□□□ -0.24
UPF1-204ENST00000596842 ZNF878C9JN71 531 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 OR2T1O43869 369 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 EDN3P14138 238 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 FOLR1P15328 257 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 RPS10P46783 165 aaKnown RBP13.57□□□□□ -0.24
UPF1-204ENST00000596842 DHPSP49366 369 aaPredicted RBP13.57□□□□□ -0.24
UPF1-204ENST00000596842 SCAND1P57086 179 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 ZNF260Q3ZCT1 412 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 MOB3CQ70IA8 216 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 SLC25A42Q86VD7 318 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 PAQR4Q8N4S7 273 aaPredicted RBP13.57□□□□□ -0.24
UPF1-204ENST00000596842 ZNF283Q8N7M2 679 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 OR1L3Q8NH93 324 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 RAB3CQ96E17 227 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 CNTNAP3BQ96NU0 1288 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 VN1R1Q9GZP7 353 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 GFOD1Q9NXC2 390 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 MRPS28Q9Y2Q9 187 aaKnown RBP13.57□□□□□ -0.24
UPF1-204ENST00000596842 TLCD2A6NGC4 264 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 TPT1P13693 172 aaKnown RBP13.57□□□□□ -0.24
UPF1-204ENST00000596842 CLRN1P58418 232 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 SMAD4Q13485 552 aaKnown RBP13.57□□□□□ -0.24
UPF1-204ENST00000596842 FAM57BQ71RH2 274 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 SLC22A24Q8N4F4 322 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 RXFP4Q8TDU9 374 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 TLNRD1Q9H1K6 362 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 SLCO5A1Q9H2Y9 848 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 PIGMQ9H3S5 423 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 MMP17Q9ULZ9 603 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 WASF3Q9UPY6 502 aa13.57□□□□□ -0.24
UPF1-204ENST00000596842 TMEM218A2RU14 115 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 SNAPINO95295 136 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 TTRP02766 147 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 DAOP14920 347 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 CSNK1EP49674 416 aaKnown RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 ROM1Q03395 351 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 MFAP5Q13361 173 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 LDLRAD3Q86YD5 345 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 RRNAD1Q96FB5 475 aaKnown RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 C1orf198Q9H425 327 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 SLC17A5Q9NRA2 495 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 F5H5K5 113 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 RER1O15258 196 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 EFSO43281 561 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 CYTIPO60759 359 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 TMEM127O75204 238 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 ID4P47928 161 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 RPP30P78346 268 aaKnown RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 FOXF1Q12946 379 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 MICBQ29980 383 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 OR5AP2Q8NGF4 316 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 NUBPLQ8TB37 319 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 CCNL2Q96S94 520 aaPredicted RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 TINAGQ9UJW2 476 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 A0A1W2PPC4 97 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 MED19A0JLT2 244 aaPredicted RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 EIF4E2O60573 245 aaKnown RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 SERPINA2P20848 420 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 GLRA1P23415 457 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 CSNK2A1P68400 391 aaPredicted RBP13.56□□□□□ -0.24
UPF1-204ENST00000596842 GKN2Q86XP6 184 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 BAP18Q8IXM2 172 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 CSNK2A3Q8NEV1 391 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 TSTD1Q8NFU3 115 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 MITD1Q8WV92 249 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 ARL11Q969Q4 196 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 MRGPRFQ96AM1 343 aa13.56□□□□□ -0.24
UPF1-204ENST00000596842 ARHGAP5-AS1Q96IT6 56 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms