RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZNF254O75437 659 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 DCTDP32321 178 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 RBMXP38159 391 aaKnown RBP13.61□□□□□ -0.23
TRIM28-206ENST00000595974 PMELP40967 661 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 ROM1Q03395 351 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 OR8B8Q15620 311 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 PRAMEF6Q5VXH4 476 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 BCDIN3DQ7Z5W3 292 aaKnown RBP13.61□□□□□ -0.23
TRIM28-206ENST00000595974 FTMTQ8N4E7 242 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 TEX29Q8N6K0 151 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 CSNK2A3Q8NEV1 391 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 MROQ9BYG7 248 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 C14orf119Q9NWQ9 140 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 HAO2Q9NYQ3 351 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 USE1Q9NZ43 259 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 ZNF319Q9P2F9 582 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 ORC6Q9Y5N6 252 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 PPIAL4EA0A075B759 164 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 PPIAL4CA0A0B4J2A2 164 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 ACOD1A6NK06 481 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 CEACAM18A8MTB9 384 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 A8MXK9 166 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 PPIAL4DF5H284 164 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 ALPLP05186 524 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 PPIAL4FP0DN26 164 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 POLR2IP36954 125 aaKnown RBP13.6□□□□□ -0.23
TRIM28-206ENST00000595974 GSK3AP49840 483 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 HCCSP53701 268 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 LCN2P80188 198 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 MPPED2Q15777 294 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 ZNF404Q494X3 552 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 ESCO2Q56NI9 601 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 DCAF12L2Q5VW00 463 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 FAHD2BQ6P2I3 314 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-206ENST00000595974 ZNF679Q8IYX0 411 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 OR8B12Q8NGG6 310 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 OR8J1Q8NGP2 316 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 OR8S1Q8NH09 359 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 DVL3Q92997 716 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-206ENST00000595974 FAHD2AQ96GK7 314 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 OR8B4Q96RC9 309 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 ADGRL4Q9HBW9 690 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 UFSP2Q9NUQ7 469 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 WARS2Q9UGM6 360 aaKnown RBP13.6□□□□□ -0.23
TRIM28-206ENST00000595974 COPS3Q9UNS2 423 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 LRCH1Q9Y2L9 728 aa13.6□□□□□ -0.23
TRIM28-206ENST00000595974 POLR3KQ9Y2Y1 108 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-206ENST00000595974 EI24O14681 340 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 RPS2P15880 293 aaKnown RBP13.59□□□□□ -0.23
TRIM28-206ENST00000595974 GNALP38405 381 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 RIDAP52758 137 aaKnown RBP13.59□□□□□ -0.23
TRIM28-206ENST00000595974 CDC42P60953 191 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 POU4F2Q12837 409 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 ZNF829Q3KNS6 432 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-206ENST00000595974 SLC35F2Q8IXU6 374 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 ITFG2Q969R8 447 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 PAPOLGQ9BWT3 736 aaKnown RBP13.59□□□□□ -0.23
TRIM28-206ENST00000595974 TMEM165Q9HC07 324 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 ABCB9Q9NP78 766 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 CLN6Q9NWW5 311 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 FAM206AQ9NX38 181 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 RNF7Q9UBF6 113 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 MIOXQ9UGB7 285 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 IKZF2Q9UKS7 526 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 PPIAL4AQ9Y536 164 aa13.59□□□□□ -0.23
TRIM28-206ENST00000595974 A0A0U1RQV5 110 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 TMEM269A0A1B0GVZ9 245 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 A6NLC8 198 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 PRR32B1ATL7 298 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 ZNF670-ZNF695F2Z2N8 137 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 PSMD9O00233 223 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 ZNF205O95201 554 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 HTR1FP30939 366 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 ALDH3A2P51648 485 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 CXCR4P61073 352 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 SCGB2A2Q13296 93 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 ZNF322Q6U7Q0 402 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-206ENST00000595974 DCDC5Q6ZRR9 648 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 RFLNBQ8N5W9 214 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 TMEM246Q9BRR3 403 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 TMPRSS13Q9BYE2 586 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 TTTY10Q9BZA0 68 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 MOB1AQ9H8S9 216 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 MPC1Q9Y5U8 109 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 FBN1P35555 2871 aaKnown RBP13.58□□□□□ -0.24
TRIM28-206ENST00000595974 DNHD1Q96M86 4753 aa13.58□□□□□ -0.24
TRIM28-206ENST00000595974 ANXA2P2A6NMY6 339 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 PHF1O43189 567 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-206ENST00000595974 WNT2P09544 360 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 ACKR3P25106 362 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 ZFP36P26651 326 aaKnown RBP13.57□□□□□ -0.24
TRIM28-206ENST00000595974 SEC61A1P61619 476 aaKnown RBP13.57□□□□□ -0.24
TRIM28-206ENST00000595974 IL5RAQ01344 420 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 EGR3Q06889 387 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 TMED1Q13445 227 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 KCNJ8Q15842 424 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 FAM201AQ5SY85 155 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 NLRC3Q7RTR2 1065 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 OR51G2Q8NGK0 314 aa13.57□□□□□ -0.24
TRIM28-206ENST00000595974 FAM81AQ8TBF8 368 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms