RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 METTL15A6NJ78 407 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 LRRC30A6NM36 301 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 LOC110117498-PIK3R3F6TDL0 507 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 MAGEB4O15481 346 aaPredicted RBP12.69□□□□□ -0.38
UPF1-202ENST00000594243 GNALP38405 381 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 GATA4P43694 442 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 IL5RAQ01344 420 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 SLC34A1Q06495 639 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 OR8B8Q15620 311 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 ZNF181Q2M3W8 571 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 AVPI1Q5T686 147 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 SSX6Q7RTT6 188 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 KCTD20Q7Z5Y7 419 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 DHRSXQ8N5I4 330 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 OR8S1Q8NH09 359 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 SIGLEC11Q96RL6 698 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 NARFLQ9H6Q4 476 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 YAE1D1Q9NRH1 226 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 C14orf119Q9NWQ9 140 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 AASSQ9UDR5 926 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 NUFIP1Q9UHK0 495 aaKnown RBP12.69□□□□□ -0.38
UPF1-202ENST00000594243 MRM2Q9UI43 246 aaKnown RBP12.69□□□□□ -0.38
UPF1-202ENST00000594243 GTF2A1LQ9UNN4 478 aa12.69□□□□□ -0.38
UPF1-202ENST00000594243 RPL36Q9Y3U8 105 aaKnown RBP12.69□□□□□ -0.38
UPF1-202ENST00000594243 CHD3Q12873 2000 aaKnown RBP12.69□□□□□ -0.38
UPF1-202ENST00000594243 LOC100289279A0A1B0GTE1 492 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 DAPL1A0PJW8 107 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 A8MV72 311 aaPredicted RBP12.68□□□□□ -0.38
UPF1-202ENST00000594243 TMEM178BH3BS89 294 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 J3QRE1 110 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 SRSF10O75494 262 aaKnown RBP12.68□□□□□ -0.38
UPF1-202ENST00000594243 MTRF1O75570 445 aaKnown RBP12.68□□□□□ -0.38
UPF1-202ENST00000594243 PNPP00491 289 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 DBTP11182 482 aaKnown RBP12.68□□□□□ -0.38
UPF1-202ENST00000594243 IRF2P14316 349 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 ATP6V1B1P15313 513 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 MAP2K3P46734 347 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 KLHL22Q53GT1 634 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 C6orf52Q5T4I8 152 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 ZNF684Q5T5D7 378 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 ZNF691Q5VV52 312 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 LIPNQ5VXI9 398 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 FAM220AQ7Z4H9 259 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 MOGAT3Q86VF5 341 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 COMMD2Q86X83 199 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 ELMOD2Q8IZ81 293 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 C1orf87Q8N0U7 546 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 ACBD7Q8N6N7 88 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 LINC01356Q8N9X3 169 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 SETD9Q8NE22 299 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 OR11L1Q8NGX0 322 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 ZNF420Q8TAQ5 688 aaPredicted RBP12.68□□□□□ -0.38
UPF1-202ENST00000594243 CYGBQ8WWM9 190 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 MSI2Q96DH6 328 aaKnown RBP12.68□□□□□ -0.38
UPF1-202ENST00000594243 MRPL48Q96GC5 212 aaKnown RBP12.68□□□□□ -0.38
UPF1-202ENST00000594243 C1orf159Q96HA4 380 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 LYZL4Q96KX0 146 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 ABCB9Q9NP78 766 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 OR52A1Q9UKL2 312 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 MPC1Q9Y5U8 109 aa12.68□□□□□ -0.38
UPF1-202ENST00000594243 CR1P17927 2039 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 ISPDA4D126 451 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 ANXA2P2A6NMY6 339 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 H0YAE9 185 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 H0YHG0 523 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 WNT9BO14905 357 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 RPP14O95059 124 aaKnown RBP12.67□□□□□ -0.38
UPF1-202ENST00000594243 PTBP3O95758 552 aaKnown RBP12.67□□□□□ -0.38
UPF1-202ENST00000594243 FADS2O95864 444 aaKnown RBP12.67□□□□□ -0.38
UPF1-202ENST00000594243 CST4P01036 141 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 TGFAP01135 160 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 IGLV3-1P01715 115 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 IL2RGP31785 369 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 ZNF85Q03923 595 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 ZNF91Q05481 1191 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 MFGE8Q08431 387 aaPredicted RBP12.67□□□□□ -0.38
UPF1-202ENST00000594243 RAB40BQ12829 278 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 IL18R1Q13478 541 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 BCL2L15Q5TBC7 163 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 FAM166AQ6J272 317 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 OR51E1Q8TCB6 317 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 Q8TCH9 128 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 RAB39BQ96DA2 213 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 LGALS12Q96DT0 336 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 GAL3ST1Q99999 423 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 PAPOLGQ9BWT3 736 aaKnown RBP12.67□□□□□ -0.38
UPF1-202ENST00000594243 FN3KRPQ9HA64 309 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 G6PC2Q9NQR9 355 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 RHBDD3Q9Y3P4 386 aa12.67□□□□□ -0.38
UPF1-202ENST00000594243 IGHV3-64DA0A0J9YX35 117 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 B4DSR2 109 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 IGHV2-70P01814 119 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 TTRP02766 147 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 GRPP07492 148 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 CDH15P55291 814 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 LMO4P61968 165 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 BTG1P62324 171 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 ADARB1P78563 741 aaKnown RBP12.66□□□□□ -0.38
UPF1-202ENST00000594243 RIPPLY1Q0D2K3 151 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 TMEM155Q4W5P6 130 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms