RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 KCNJ15Q99712 375 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 FOXB1Q99853 325 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 ATF6BQ99941 703 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 PBOV1Q9GZY1 135 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 HDHD2Q9H0R4 259 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 GPR35Q9HC97 309 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 ABCB9Q9NP78 766 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 BRD7Q9NPI1 651 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 ELOVL5Q9NYP7 299 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 PLEK2Q9NYT0 353 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 ABRACLQ9P1F3 81 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 TIMM10BQ9Y5J6 103 aa8.84□□□□□ -0.99
SS18-210ENST00000578700 LOC107986453A0A1B0GWG9 222 aa8.83□□□□□ -1
SS18-210ENST00000578700 FABP12A6NFH5 140 aa8.83□□□□□ -1
SS18-210ENST00000578700 SGCEO43556 437 aa8.83□□□□□ -1
SS18-210ENST00000578700 PTBP1P26599 531 aaKnown RBP eCLIP8.83□□□□□ -1
SS18-210ENST00000578700 CCKARP32238 428 aa8.83□□□□□ -1
SS18-210ENST00000578700 KIR2DL2P43627 348 aaPredicted RBP8.83□□□□□ -1
SS18-210ENST00000578700 SLC6A9P48067 706 aa8.83□□□□□ -1
SS18-210ENST00000578700 CX3CR1P49238 355 aa8.83□□□□□ -1
SS18-210ENST00000578700 PRKXP51817 358 aa8.83□□□□□ -1
SS18-210ENST00000578700 TPTEP56180 551 aa8.83□□□□□ -1
SS18-210ENST00000578700 CAV3P56539 151 aa8.83□□□□□ -1
SS18-210ENST00000578700 GALK2Q01415 458 aa8.83□□□□□ -1
SS18-210ENST00000578700 MFGE8Q08431 387 aaPredicted RBP8.83□□□□□ -1
SS18-210ENST00000578700 ENDOGQ14249 297 aaKnown RBP8.83□□□□□ -1
SS18-210ENST00000578700 RAB35Q15286 201 aa8.83□□□□□ -1
SS18-210ENST00000578700 SLC36A2Q495M3 483 aa8.83□□□□□ -1
SS18-210ENST00000578700 METAP1DQ6UB28 335 aaPredicted RBP8.83□□□□□ -1
SS18-210ENST00000578700 ZNF813Q6ZN06 617 aa8.83□□□□□ -1
SS18-210ENST00000578700 DPPA2Q7Z7J5 298 aa8.83□□□□□ -1
SS18-210ENST00000578700 LAX1Q8IWV1 398 aa8.83□□□□□ -1
SS18-210ENST00000578700 ELMOD2Q8IZ81 293 aa8.83□□□□□ -1
SS18-210ENST00000578700 PARP16Q8N5Y8 322 aa8.83□□□□□ -1
SS18-210ENST00000578700 CCDC54Q8NEL0 328 aa8.83□□□□□ -1
SS18-210ENST00000578700 IL17RDQ8NFM7 739 aa8.83□□□□□ -1
SS18-210ENST00000578700 RGP1Q92546 391 aaPredicted RBP8.83□□□□□ -1
SS18-210ENST00000578700 NABP1Q96AH0 204 aa8.83□□□□□ -1
SS18-210ENST00000578700 PGAM5Q96HS1 289 aa8.83□□□□□ -1
SS18-210ENST00000578700 GMPPAQ96IJ6 420 aaPredicted RBP8.83□□□□□ -1
SS18-210ENST00000578700 CCDC32Q9BV29 185 aa8.83□□□□□ -1
SS18-210ENST00000578700 RNF121Q9H920 327 aa8.83□□□□□ -1
SS18-210ENST00000578700 PLEKHA1Q9HB21 404 aa8.83□□□□□ -1
SS18-210ENST00000578700 DDX28Q9NUL7 540 aaKnown RBP8.83□□□□□ -1
SS18-210ENST00000578700 FAM206AQ9NX38 181 aa8.83□□□□□ -1
SS18-210ENST00000578700 NUFIP1Q9UHK0 495 aaKnown RBP8.83□□□□□ -1
SS18-210ENST00000578700 FBXL3Q9UKT7 428 aa8.83□□□□□ -1
SS18-210ENST00000578700 PROCRQ9UNN8 238 aa8.83□□□□□ -1
SS18-210ENST00000578700 LAMP3Q9UQV4 416 aa8.83□□□□□ -1
SS18-210ENST00000578700 SLC22A13Q9Y226 551 aa8.83□□□□□ -1
SS18-210ENST00000578700 AK6Q9Y3D8 172 aaKnown RBP8.83□□□□□ -1
SS18-210ENST00000578700 BOLA1Q9Y3E2 137 aa8.83□□□□□ -1
SS18-210ENST00000578700 N6AMT1Q9Y5N5 214 aa8.83□□□□□ -1
SS18-210ENST00000578700 V9GY05 133 aa8.83□□□□□ -1
SS18-210ENST00000578700 CR1P17927 2039 aa8.83□□□□□ -1
SS18-210ENST00000578700 PCNX3Q9H6A9 2034 aa8.82□□□□□ -1
SS18-210ENST00000578700 TRBV5-7A0A0A0MS05 114 aa8.82□□□□□ -1
SS18-210ENST00000578700 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.82□□□□□ -1
SS18-210ENST00000578700 ISPDA4D126 451 aa8.82□□□□□ -1
SS18-210ENST00000578700 MEGF11A6BM72 1044 aa8.82□□□□□ -1
SS18-210ENST00000578700 RPL36A-HNRNPH2H7BZ11 118 aa8.82□□□□□ -1
SS18-210ENST00000578700 SYT7O43581 403 aa8.82□□□□□ -1
SS18-210ENST00000578700 SRSF10O75494 262 aaKnown RBP8.82□□□□□ -1
SS18-210ENST00000578700 PNPP00491 289 aa8.82□□□□□ -1
SS18-210ENST00000578700 CRHP06850 196 aa8.82□□□□□ -1
SS18-210ENST00000578700 ERCC1P07992 297 aaPredicted RBP8.82□□□□□ -1
SS18-210ENST00000578700 B4GALT1P15291 398 aa8.82□□□□□ -1
SS18-210ENST00000578700 ZNF20P17024 532 aa8.82□□□□□ -1
SS18-210ENST00000578700 APEX1P27695 318 aaKnown RBP8.82□□□□□ -1
SS18-210ENST00000578700 LOXP28300 417 aaPredicted RBP8.82□□□□□ -1
SS18-210ENST00000578700 CAPZA1P52907 286 aa8.82□□□□□ -1
SS18-210ENST00000578700 HIST1H3AP68431 136 aa8.82□□□□□ -1
SS18-210ENST00000578700 KRTAP1-1Q07627 177 aa8.82□□□□□ -1
SS18-210ENST00000578700 BEX5Q5H9J7 111 aa8.82□□□□□ -1
SS18-210ENST00000578700 CEP78Q5JTW2 689 aa8.82□□□□□ -1
SS18-210ENST00000578700 HIST2H3PS2Q5TEC6 136 aa8.82□□□□□ -1
SS18-210ENST00000578700 TSPO2Q5TGU0 170 aa8.82□□□□□ -1
SS18-210ENST00000578700 GLT8D1Q68CQ7 371 aa8.82□□□□□ -1
SS18-210ENST00000578700 BAIAP2L2Q6UXY1 529 aa8.82□□□□□ -1
SS18-210ENST00000578700 HIST2H3AQ71DI3 136 aa8.82□□□□□ -1
SS18-210ENST00000578700 LRRC28Q86X40 367 aaPredicted RBP8.82□□□□□ -1
SS18-210ENST00000578700 WFDC8Q8IUA0 241 aa8.82□□□□□ -1
SS18-210ENST00000578700 RDH10Q8IZV5 341 aa8.82□□□□□ -1
SS18-210ENST00000578700 OR8H2Q8N162 312 aa8.82□□□□□ -1
SS18-210ENST00000578700 SAMD12Q8N8I0 201 aa8.82□□□□□ -1
SS18-210ENST00000578700 OR5D14Q8NGL3 314 aa8.82□□□□□ -1
SS18-210ENST00000578700 OR10S1Q8NGN2 331 aa8.82□□□□□ -1
SS18-210ENST00000578700 TRMT10AQ8TBZ6 339 aaKnown RBP8.82□□□□□ -1
SS18-210ENST00000578700 AKAP1Q92667 903 aaKnown RBP eCLIP8.82□□□□□ -1
SS18-210ENST00000578700 RNF166Q96A37 237 aaPredicted RBP8.82□□□□□ -1
SS18-210ENST00000578700 PLPPR2Q96GM1 343 aa8.82□□□□□ -1
SS18-210ENST00000578700 SH3GL3Q99963 347 aa8.82□□□□□ -1
SS18-210ENST00000578700 REG4Q9BYZ8 158 aa8.82□□□□□ -1
SS18-210ENST00000578700 PPIL3Q9H2H8 161 aaKnown RBP8.82□□□□□ -1
SS18-210ENST00000578700 G6PC2Q9NQR9 355 aa8.82□□□□□ -1
SS18-210ENST00000578700 RABL2AQ9UBK7 228 aaPredicted RBP8.82□□□□□ -1
SS18-210ENST00000578700 CLEC4AQ9UMR7 237 aa8.82□□□□□ -1
SS18-210ENST00000578700 RABL2BQ9UNT1 228 aa8.82□□□□□ -1
SS18-210ENST00000578700 FOXJ3Q9UPW0 622 aa8.82□□□□□ -1
SS18-210ENST00000578700 PRR14LQ5THK1 2151 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms