RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 OR4C15Q8NGM1 316 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 MCUR1Q96AQ8 359 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 KCNJ15Q99712 375 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 OPA3Q9H6K4 179 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 EGLN3Q9H6Z9 239 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 CNTD2Q9H8S5 307 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 C14orf119Q9NWQ9 140 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 PRPF19Q9UMS4 504 aaKnown RBP17.39■□□□□ 0.37
VPS53-216ENST00000574029 VWFP04275 2813 aa17.39■□□□□ 0.37
VPS53-216ENST00000574029 A6NLC8 198 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 FABP3P05413 133 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 PCK2Q16822 640 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 RPL13AP3Q6NVV1 102 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 ZDHHC21Q8IVQ6 265 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 C11orf53Q8IXP5 236 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 SCCPDHQ8NBX0 429 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 OR52L1Q8NGH7 329 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 SPSB4Q96A44 273 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 NSMCE2Q96MF7 247 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 RBM4BQ9BQ04 359 aaKnown RBP17.38■□□□□ 0.37
VPS53-216ENST00000574029 COPS4Q9BT78 406 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 MUC13Q9H3R2 512 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 IL1RAPQ9NPH3 570 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 ACTR3BQ9P1U1 418 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 RPUSD1Q9UJJ7 312 aaKnown RBP17.38■□□□□ 0.37
VPS53-216ENST00000574029 KPTNQ9Y664 436 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 CDH10Q9Y6N8 788 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 COMMD3-BMI1R4GMX3 469 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 TGP01266 2768 aa17.38■□□□□ 0.37
VPS53-216ENST00000574029 CMYA5Q8N3K9 4069 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 IGHV3OR15-7A0A075B7D8 119 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 A0A0G2JK05 382 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 hCG_1807616A0A1W2PRN6 198 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 XRCC2O43543 280 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 DDOSTP39656 456 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 PRKXP51817 358 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 PROK1P58294 105 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 POU4F2Q12837 409 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 TRIM25Q14258 630 aaKnown RBP17.37■□□□□ 0.37
VPS53-216ENST00000574029 CDONQ4KMG0 1287 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 PIP4P2Q8N4L2 257 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 OR51L1Q8NGJ5 315 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 SLAMF6Q96DU3 332 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 RNPEPL1Q9HAU8 725 aa17.37■□□□□ 0.37
VPS53-216ENST00000574029 SLC2A1P11166 492 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 TEX30Q5JUR7 227 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 GDPGP1Q6ZNW5 385 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 VMO1Q7Z5L0 202 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 WDR86Q86TI4 376 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 LNX2Q8N448 690 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 SLC37A3Q8NCC5 494 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 LY6G5BQ8NDX9 201 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 ST8SIA4Q92187 359 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 CENPMQ9NSP4 180 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 IL20Q9NYY1 176 aa17.36■□□□□ 0.37
VPS53-216ENST00000574029 A0A1B0GVI7 797 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 ANKRD30BLA7E2S9 258 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 SPARCP09486 303 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 MUC1P15941 1255 aaPredicted RBP17.35■□□□□ 0.37
VPS53-216ENST00000574029 GRK5P34947 590 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 ENTPD1P49961 510 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 HMGA2P52926 109 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 TAF13Q15543 124 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 TAF9Q16594 264 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 PDZD9Q8IXQ8 264 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 FGFRL1Q8N441 504 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 ZSCAN4Q8NAM6 433 aaPredicted RBP17.35■□□□□ 0.37
VPS53-216ENST00000574029 OR9Q1Q8NGQ5 310 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 LRRC29Q8WV35 223 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 SLC7A6OSQ96CW6 309 aaPredicted RBP17.35■□□□□ 0.37
VPS53-216ENST00000574029 DMRTB1Q96MA1 342 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 DPAGT1Q9H3H5 408 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 N6AMT1Q9Y5N5 214 aa17.35■□□□□ 0.37
VPS53-216ENST00000574029 A0A1B0GW55 424 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 ZNF878C9JN71 531 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.34■□□□□ 0.37
VPS53-216ENST00000574029 ZNF593O00488 134 aaPredicted RBP17.34■□□□□ 0.37
VPS53-216ENST00000574029 KRT36O76013 467 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 DUX4L2P0CJ85 424 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 DUX4L3P0CJ86 424 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 DUX4L4P0CJ87 422 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 DUX4L5P0CJ88 424 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 DUX4L6P0CJ89 424 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 DUX4L7P0CJ90 424 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 FMO3P31513 532 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 ELF3P78545 371 aaPredicted RBP17.34■□□□□ 0.37
VPS53-216ENST00000574029 FAM3AP98173 230 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 MS4A2Q01362 244 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 BNIP1Q12981 228 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 MICBQ29980 383 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 DUX4L9Q6RFH8 374 aaPredicted RBP17.34■□□□□ 0.37
VPS53-216ENST00000574029 METAP1DQ6UB28 335 aaPredicted RBP17.34■□□□□ 0.37
VPS53-216ENST00000574029 Q6ZSV7 163 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 SLC16A9Q7RTY1 509 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 ZNF511Q8NB15 262 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 OR1M1Q8NGA1 313 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 OR8D4Q8NGM9 314 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 OR8S1Q8NH09 359 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 CCL13Q99616 98 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 BTBD10Q9BSF8 475 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms