RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 FAM201AQ5SY85 155 aa16.9■□□□□ 0.3
NUP88-204ENST00000572290 ZFP1Q6P2D0 407 aa16.9■□□□□ 0.3
NUP88-204ENST00000572290 DEGS2Q6QHC5 323 aa16.9■□□□□ 0.3
NUP88-204ENST00000572290 TEX29Q8N6K0 151 aa16.9■□□□□ 0.3
NUP88-204ENST00000572290 IL4I1Q96RQ9 567 aa16.9■□□□□ 0.3
NUP88-204ENST00000572290 RBM4BQ9BQ04 359 aaKnown RBP16.9■□□□□ 0.3
NUP88-204ENST00000572290 GABARAPL3Q9BY60 117 aa16.9■□□□□ 0.3
NUP88-204ENST00000572290 RIBC2Q9H4K1 309 aa16.9■□□□□ 0.3
NUP88-204ENST00000572290 H3BNX3 289 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 CPT2P23786 658 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 GID4Q8IVV7 300 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 C10orf67Q8IYJ2 551 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 CSNK2A3Q8NEV1 391 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 OR8S1Q8NH09 359 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 ASB17Q8WXJ9 295 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 TMEM246Q9BRR3 403 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 TMPRSS13Q9BYE2 586 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 MROQ9BYG7 248 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 METTL17Q9H7H0 456 aaPredicted RBP16.89■□□□□ 0.29
NUP88-204ENST00000572290 C14orf119Q9NWQ9 140 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 RNF7Q9UBF6 113 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 METRNQ9UJH8 293 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 COPS3Q9UNS2 423 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 MALRD1Q5VYJ5 2156 aa16.89■□□□□ 0.29
NUP88-204ENST00000572290 PPIAL4CA0A0B4J2A2 164 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 RNF212BA8MTL3 300 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 PSMD9O00233 223 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 AVPP01185 164 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 GRPP07492 148 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 WNT2P09544 360 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 RPS2P15880 293 aaKnown RBP16.88■□□□□ 0.29
NUP88-204ENST00000572290 SEC61A1P61619 476 aaKnown RBP16.88■□□□□ 0.29
NUP88-204ENST00000572290 ROM1Q03395 351 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 SNCBQ16143 134 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 ZNF404Q494X3 552 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 ESCO2Q56NI9 601 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 C1orf229Q6ZS94 237 aaPredicted RBP16.88■□□□□ 0.29
NUP88-204ENST00000572290 ZNF679Q8IYX0 411 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 OR8B12Q8NGG6 310 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 OR8B4Q96RC9 309 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 MIOXQ9UGB7 285 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 ZNF391Q9UJN7 358 aa16.88■□□□□ 0.29
NUP88-204ENST00000572290 POLR3KQ9Y2Y1 108 aaPredicted RBP16.88■□□□□ 0.29
NUP88-204ENST00000572290 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.87■□□□□ 0.291e-14■■■■■ 27.2
NUP88-204ENST00000572290 LOC105371242A0A075B767 164 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 A6NLC8 198 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 A8MXK9 166 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 ZNF254O75437 659 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 DCTDP32321 178 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 GNALP38405 381 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 OR8B8Q15620 311 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 SLC35F2Q8IXU6 374 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 FTMTQ8N4E7 242 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 RFLNBQ8N5W9 214 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 TMEM158Q8WZ71 300 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 MNTQ99583 582 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 TTTY10Q9BZA0 68 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 C7orf69Q9H7B7 122 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 ADGRL4Q9HBW9 690 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 C1orf123Q9NWV4 160 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 HAO2Q9NYQ3 351 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 IKZF2Q9UKS7 526 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 LRCH1Q9Y2L9 728 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 RHBDD3Q9Y3P4 386 aa16.87■□□□□ 0.29
NUP88-204ENST00000572290 TMEM269A0A1B0GVZ9 245 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 ACOD1A6NK06 481 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 PRR32B1ATL7 298 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 PHYHO14832 338 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 RIDAP52758 137 aaKnown RBP16.86■□□□□ 0.29
NUP88-204ENST00000572290 SCGB2A2Q13296 93 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 C19orf18Q8NEA5 215 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 DEFB108BQ8NET1 73 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 NEIL1Q96FI4 390 aaPredicted RBP16.86■□□□□ 0.29
NUP88-204ENST00000572290 LYZL4Q96KX0 146 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 PAPOLGQ9BWT3 736 aaKnown RBP16.86■□□□□ 0.29
NUP88-204ENST00000572290 MMP26Q9NRE1 261 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 FAM206AQ9NX38 181 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 ORC6Q9Y5N6 252 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 TANC2Q9HCD6 1990 aa16.86■□□□□ 0.29
NUP88-204ENST00000572290 ZNF670-ZNF695F2Z2N8 137 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 TRAPPC2LH3BP13 241 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 CXCR4P61073 352 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 ZNF829Q3KNS6 432 aaPredicted RBP16.85■□□□□ 0.29
NUP88-204ENST00000572290 ZNF322Q6U7Q0 402 aaPredicted RBP16.85■□□□□ 0.29
NUP88-204ENST00000572290 DCDC5Q6ZRR9 648 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 NLRC3Q7RTR2 1065 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 C1QL2Q7Z5L3 287 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 BOLLQ8N9W6 283 aaKnown RBP16.85■□□□□ 0.29
NUP88-204ENST00000572290 OR8B3Q8NGG8 313 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 OR51G2Q8NGK0 314 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 OR8J1Q8NGP2 316 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 RAB3IPQ96QF0 476 aaPredicted RBP16.85■□□□□ 0.29
NUP88-204ENST00000572290 OR8B2Q96RD0 313 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 SSBP3Q9BWW4 388 aaPredicted RBP16.85■□□□□ 0.29
NUP88-204ENST00000572290 CLN6Q9NWW5 311 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 USE1Q9NZ43 259 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 OR5V1Q9UGF6 321 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 WARS2Q9UGM6 360 aaKnown RBP16.85■□□□□ 0.29
NUP88-204ENST00000572290 MPC1Q9Y5U8 109 aa16.85■□□□□ 0.29
NUP88-204ENST00000572290 hCG_1807616A0A1W2PRN6 198 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms