RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CELF2-AS1Q8N7Q2 184 aa9.07□□□□□ -0.96
VPS53-207ENST00000570510 LRRC75AQ8NAA5 344 aa9.07□□□□□ -0.96
VPS53-207ENST00000570510 Q8TCH9 128 aa9.07□□□□□ -0.96
VPS53-207ENST00000570510 NMD3Q96D46 503 aaKnown RBP9.07□□□□□ -0.96
VPS53-207ENST00000570510 LRGUKQ96M69 825 aa9.07□□□□□ -0.96
VPS53-207ENST00000570510 BTBD10Q9BSF8 475 aa9.07□□□□□ -0.96
VPS53-207ENST00000570510 NRIP3Q9NQ35 241 aa9.07□□□□□ -0.96
VPS53-207ENST00000570510 RPUSD1Q9UJJ7 312 aaKnown RBP9.07□□□□□ -0.96
VPS53-207ENST00000570510 AURKCQ9UQB9 309 aa9.07□□□□□ -0.96
VPS53-207ENST00000570510 SIGLEC7Q9Y286 467 aa9.07□□□□□ -0.96
VPS53-207ENST00000570510 hCG_1807616A0A1W2PRN6 198 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 ARRDC5A6NEK1 342 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 OOEPA6NGQ2 149 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 J3KTA2 159 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 J3QW42 95 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 XKRYO14609 159 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 GYG2O15488 501 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 CLIC3O95833 236 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 RAP2AP10114 183 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 ZNF26P17031 533 aaPredicted RBP9.06□□□□□ -0.96
VPS53-207ENST00000570510 SDHAP31040 664 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 RRM2P31350 389 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 RPS6KA3P51812 740 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 CTXN1P60606 82 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 FHL1Q13642 323 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 ENDOGQ14249 297 aaKnown RBP9.06□□□□□ -0.96
VPS53-207ENST00000570510 OR8G1Q15617 311 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 PRAMEF6Q5VXH4 476 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 FOXL2NBQ6ZUU3 175 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 RNF144BQ7Z419 303 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 RNF148Q8N7C7 305 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 WFDC9Q8NEX5 89 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 SPRYD4Q8WW59 207 aaPredicted RBP9.06□□□□□ -0.96
VPS53-207ENST00000570510 SLC7A6Q92536 515 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 APOBEC3DQ96AK3 386 aaPredicted RBP9.06□□□□□ -0.96
VPS53-207ENST00000570510 RCC1LQ96I51 464 aaKnown RBP9.06□□□□□ -0.96
VPS53-207ENST00000570510 EMC7Q9NPA0 242 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 GRHPRQ9UBQ7 328 aa9.06□□□□□ -0.96
VPS53-207ENST00000570510 NOP16Q9Y3C1 178 aaKnown RBP9.06□□□□□ -0.96
VPS53-207ENST00000570510 TCRBV5S2A0A599 114 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 IQCF6A8MYZ5 107 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 ACOT8O14734 319 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 DNAJC8O75937 253 aaPredicted RBP9.05□□□□□ -0.96
VPS53-207ENST00000570510 PAICSP22234 425 aaKnown RBP9.05□□□□□ -0.96
VPS53-207ENST00000570510 LMO1P25800 156 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 YAP1P46937 504 aaKnown RBP9.05□□□□□ -0.96
VPS53-207ENST00000570510 GSSP48637 474 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 ACSM1Q08AH1 577 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 BNIP1Q12981 228 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 TSPAN31Q12999 210 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 MAB21L1Q13394 359 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 LAPTM4AQ15012 233 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 MPPED2Q15777 294 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 FGD3Q5JSP0 725 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 SMARCD3Q6STE5 483 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 CD300LDQ6UXZ3 194 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 FAM122BQ7Z309 247 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 PAPD5Q8NDF8 572 aaKnown RBP9.05□□□□□ -0.96
VPS53-207ENST00000570510 BEND2Q8NDZ0 799 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 MOSPD2Q8NHP6 518 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 GNPDA2Q8TDQ7 276 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 OR5M11Q96RB7 305 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 CHID1Q9BWS9 393 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 GPR61Q9BZJ8 451 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 WDR76Q9H967 626 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 PALMDQ9NP74 551 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 POLE4Q9NR33 117 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 GMPR2Q9P2T1 348 aaKnown RBP9.05□□□□□ -0.96
VPS53-207ENST00000570510 ATPIF1Q9UII2 106 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 BAIAP2Q9UQB8 552 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 POLR1DQ9Y2S0 133 aa9.05□□□□□ -0.96
VPS53-207ENST00000570510 TRBV4-1A0A0J9YWV2 114 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 PRSS37A4D1T9 235 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 UNC119BA6NIH7 251 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 A6NLC8 198 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 CDC42EP2O14613 210 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 CRABP1P29762 137 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 HOXD3P31249 432 aaPredicted RBP9.04□□□□□ -0.96
VPS53-207ENST00000570510 SLC6A6P31641 620 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 RPL4P36578 427 aaKnown RBP9.04□□□□□ -0.96
VPS53-207ENST00000570510 CD200P41217 278 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 CENPAP49450 140 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 UBE2E1P51965 193 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 KRTAP10-11P60412 298 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 LSM6P62312 80 aaKnown RBP9.04□□□□□ -0.96
VPS53-207ENST00000570510 SPIBQ01892 262 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 POU4F2Q12837 409 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 MALLQ13021 153 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 KLRD1Q13241 179 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 AQP6Q13520 282 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 BLMHQ13867 455 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 LRRC75BQ2VPJ9 315 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 RFX4Q33E94 735 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 CLEC12AQ5QGZ9 265 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 NCR3LG1Q68D85 454 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 OR2T5Q6IEZ7 315 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 DNM1P34Q6PK57 102 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 PNKDQ8N490 385 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 FAM86B1Q8N7N1 296 aa9.04□□□□□ -0.96
VPS53-207ENST00000570510 OR2T29Q8NH02 315 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms