RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 XRCC2O43543 280 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 EIF4E2O60573 245 aaKnown RBP12.88□□□□□ -0.35
VPS35-210ENST00000568784 IGHV4-34P06331 123 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 TMEM225BP0DP42 221 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 OPRM1P35372 400 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 ASCL1P50553 236 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 PJVKQ0ZLH3 352 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 ABCA11PQ4W5N1 156 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 PRAMEF20Q5VT98 475 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 ADAM5Q6NVV9 412 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 GKN2Q86XP6 184 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 ZDHHC22Q8N966 263 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 FLVCR1Q9Y5Y0 555 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 HS3ST3A1Q9Y663 406 aa12.88□□□□□ -0.35
VPS35-210ENST00000568784 ALG1L2C9J202 215 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 H0YIZ8 118 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 DIRAS3O95661 229 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 PNLIPRP2P54317 469 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 ZNF121P58317 390 aaPredicted RBP12.87□□□□□ -0.35
VPS35-210ENST00000568784 DRAM2Q6UX65 266 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 TSTD1Q8NFU3 115 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 SECTM1Q8WVN6 248 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 OR10C1Q96KK4 312 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 NIT2Q9NQR4 276 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 RAB19A4D1S5 217 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 HOXC4P09017 264 aaPredicted RBP12.87□□□□□ -0.35
VPS35-210ENST00000568784 ROM1Q03395 351 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 KCNG3Q8TAE7 436 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 ZNF519Q8TB69 540 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 FNDC9Q8TBE3 224 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 SLC5A6Q9Y289 635 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 HSPB2A8KAH6 182 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 RNASEK-C17orf49H0YIS7 233 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 NUDT21O43809 227 aaKnown RBP12.87□□□□□ -0.35
VPS35-210ENST00000568784 PET100P0DJ07 73 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 DRD1P21728 446 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 EIF5AP63241 154 aaKnown RBP12.87□□□□□ -0.35
VPS35-210ENST00000568784 HSPB2Q16082 182 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 BRICD5Q6PL45 260 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 SCGB3A2Q96PL1 93 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 FAM117AQ9C073 453 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 PLEKHJ1Q9NW61 149 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 KLHL13Q9P2N7 655 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 RALGAPA1Q6GYQ0 2036 aa12.87□□□□□ -0.35
VPS35-210ENST00000568784 TLCD2A6NGC4 264 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 DDAH2O95865 285 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 CD74P04233 296 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 FCGR2AP12318 317 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 CAMLGP49069 296 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 FNDC7Q5VTL7 733 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 OR2A2Q6IF42 318 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 PAQR4Q8N4S7 273 aaPredicted RBP12.86□□□□□ -0.35
VPS35-210ENST00000568784 ZNF721Q8TF20 911 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 C5orf67F2Z3F1 127 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 G3V3Y1 287 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 TPPPO94811 219 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 CSTBP04080 98 aaKnown RBP12.86□□□□□ -0.35
VPS35-210ENST00000568784 ZNF43P17038 809 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 CSRP1P21291 193 aaKnown RBP12.86□□□□□ -0.35
VPS35-210ENST00000568784 UQCC3Q6UW78 93 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 AQP3Q92482 292 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 RSRP1Q9BUV0 290 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 VN1R1Q9GZP7 353 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 CCDC85CA6NKD9 419 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 MBTPS2O43462 519 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 CSNK1EP49674 416 aaKnown RBP12.86□□□□□ -0.35
VPS35-210ENST00000568784 FOXK1P85037 733 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 TMEM176BQ3YBM2 270 aaPredicted RBP12.86□□□□□ -0.35
VPS35-210ENST00000568784 C14orf28Q4W4Y0 310 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 PHLDA2Q53GA4 152 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 SULF2Q8IWU5 870 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 OR4A4PQ8NGN8 299 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 DDIT4LQ96D03 193 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 ZNF700Q9H0M5 742 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 OR10A2Q9H208 303 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 CHRDQ9H2X0 955 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 BARX1Q9HBU1 254 aaPredicted RBP12.86□□□□□ -0.35
VPS35-210ENST00000568784 KNTC1P50748 2209 aa12.86□□□□□ -0.35
VPS35-210ENST00000568784 EPOPA6NHQ4 379 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 BPNT1O95861 308 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 FCGR2CP31995 323 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 MFAP5Q13361 173 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 ANKRD55Q3KP44 614 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 FAM166AQ6J272 317 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 RBM24Q9BX46 236 aaKnown RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 CHST11Q9NPF2 352 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 LANCL2Q9NS86 450 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 AMDHD2Q9Y303 409 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 FBXO7Q9Y3I1 522 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 ZNF217O75362 1048 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 MTRF1O75570 445 aaKnown RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 DXOO77932 396 aaKnown RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 HEXBP07686 556 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 HIST1H1DP16402 221 aaKnown RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 RFC3P40938 356 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 CBX5P45973 191 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 CX3CR1P49238 355 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 PDCD1Q15116 288 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 MEX3BQ6ZN04 569 aaKnown RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 PGAP1Q75T13 922 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms