RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 BMP4P12644 408 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 FOSL1P15407 271 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 EGR1P18146 543 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 ACHEP22303 614 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 THBS2P35442 1172 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 MMP16P51512 607 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 SEC61A1P61619 476 aaKnown RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 EGR3Q06889 387 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 TMED1Q13445 227 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 TMEM249Q2WGJ8 235 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 CDONQ4KMG0 1287 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 FAM209AQ5JX71 171 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 DEGS2Q6QHC5 323 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 Q6ZSR3 168 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 ZNF826PQ6ZT77 177 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 ZNF771Q7L3S4 317 aaPredicted RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 MRPL21Q7Z2W9 205 aaKnown RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 LHFPL3Q86UP9 236 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 ELMOD2Q8IZ81 293 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 PLPP7Q8NBV4 271 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 OR5L1Q8NGL2 311 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 OR2T27Q8NH04 317 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 OR10AC1Q8NH08 325 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 OR51E1Q8TCB6 317 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 SNX33Q8WV41 574 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 SEH1LQ96EE3 360 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 PGAM5Q96HS1 289 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 METTL17Q9H7H0 456 aaPredicted RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 CHODLQ9H9P2 273 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 SAP30LQ9HAJ7 183 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 GPR84Q9NQS5 396 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 NUFIP1Q9UHK0 495 aaKnown RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 CLEC2DQ9UHP7 191 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 IKZF2Q9UKS7 526 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 WIPI2Q9Y4P8 454 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 ORC6Q9Y5N6 252 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 SIRT4Q9Y6E7 314 aaPredicted RBP7.76□□□□□ -1.17
VPS35-206ENST00000565228 R4GMQ9 66 aa7.76□□□□□ -1.17
VPS35-206ENST00000565228 DOCK11Q5JSL3 2073 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 GGT3PA6NGU5 568 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 METTL15A6NJ78 407 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 ZNF670-ZNF695F2Z2N8 137 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 P2RY10O00398 339 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 XRCC2O43543 280 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 XPNPEP2O43895 674 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 FAM20BO75063 409 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 ATP6V1G2O95670 118 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 IGHV2-70P01814 119 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 TFF1P04155 84 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 SLC25A16P16260 332 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 CCL1P22362 96 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 USF1P22415 310 aaPredicted RBP7.75□□□□□ -1.17
VPS35-206ENST00000565228 DCTDP32321 178 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 CAPGP40121 348 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 CD200P41217 278 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 ETV1P50549 477 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 DSCR9P59020 149 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 SELENOVP59797 346 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 CSNK2BP67870 215 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 MRPS11P82912 194 aaKnown RBP7.75□□□□□ -1.17
VPS35-206ENST00000565228 IL5RAQ01344 420 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 ZMYND11Q15326 602 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 ODF4Q2M2E3 257 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 PCGF3Q3KNV8 242 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 MEDAGQ5VYS4 303 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 CRIP3Q6Q6R5 217 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 CLEC9AQ6UXN8 241 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 MOGAT3Q86VF5 341 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.75□□□□□ -1.17
VPS35-206ENST00000565228 DHRSXQ8N5I4 330 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 ZNF485Q8NCK3 441 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 OR14K1Q8NGZ2 314 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 OR13G1Q8NGZ3 307 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 ASB17Q8WXJ9 295 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 RGP1Q92546 391 aaPredicted RBP7.75□□□□□ -1.17
VPS35-206ENST00000565228 CCL17Q92583 94 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 GGHQ92820 318 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 MSI2Q96DH6 328 aaKnown RBP7.75□□□□□ -1.17
VPS35-206ENST00000565228 PELI1Q96FA3 418 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 C1orf159Q96HA4 380 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 COG8Q96MW5 612 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 PIMREGQ9BSJ6 248 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 MROQ9BYG7 248 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 OR10A2Q9H208 303 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 NIPAL2Q9H841 368 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 CYSLTR2Q9NS75 346 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 TMEM106BQ9NUM4 274 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 TMEM100Q9NV29 134 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 PAK1IP1Q9NWT1 392 aaPredicted RBP7.75□□□□□ -1.17
VPS35-206ENST00000565228 ERVK13-1Q9NX77 482 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 FRRS1LQ9P0K9 344 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 IL19Q9UHD0 177 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 OR52A1Q9UKL2 312 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 ZDHHC8Q9ULC8 765 aa7.75□□□□□ -1.17
VPS35-206ENST00000565228 A0A0U1RQV5 110 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 A0A1B0GW55 424 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 PLSCR5A0PG75 271 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 ZNF850A8MQ14 1090 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 INAFM1C9JVW0 142 aa7.74□□□□□ -1.17
VPS35-206ENST00000565228 H0YAE9 185 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms