RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 EPHA1P21709 976 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 EPHA2P29317 976 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 GSK3AP49840 483 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 SCGB2A2Q13296 93 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 ZNF404Q494X3 552 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 LYPD2Q6UXB3 125 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 BCDIN3DQ7Z5W3 292 aaKnown RBP13.11□□□□□ -0.31
VPS39-203ENST00000561797 KLBQ86Z14 1044 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 ZDHHC13Q8IUH4 622 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 TCEANCQ8N8B7 351 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 SPERTQ8NA61 448 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 OR8S1Q8NH09 359 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 NEIL1Q96FI4 390 aaPredicted RBP13.11□□□□□ -0.31
VPS39-203ENST00000561797 SSBP3Q9BWW4 388 aaPredicted RBP13.11□□□□□ -0.31
VPS39-203ENST00000561797 C1orf123Q9NWV4 160 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 OPN4Q9UHM6 478 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 LRCH1Q9Y2L9 728 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 LRP12Q9Y561 859 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 PPIAL4CA0A0B4J2A2 164 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 A8MXK9 166 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 ALOX5APP20292 161 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 CFL1P23528 166 aaKnown RBP13.1□□□□□ -0.31
VPS39-203ENST00000561797 CD80P33681 288 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 GNB2P62879 340 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 LCN1P1Q5VSP4 162 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 KDM4DQ6B0I6 523 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 SFRP4Q6FHJ7 346 aaPredicted RBP13.1□□□□□ -0.31
VPS39-203ENST00000561797 ZNF826PQ6ZT77 177 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 OR8B3Q8NGG8 313 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 OR8B2Q96RD0 313 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 TTTY10Q9BZA0 68 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 PRRG3Q9BZD7 231 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 YIPF3Q9GZM5 350 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 GABARAPL1Q9H0R8 117 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 PPP1R3EQ9H7J1 279 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 C14orf119Q9NWQ9 140 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 H2AFY2Q9P0M6 372 aaPredicted RBP13.1□□□□□ -0.31
VPS39-203ENST00000561797 OR5V1Q9UGF6 321 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 POLR3KQ9Y2Y1 108 aaPredicted RBP13.1□□□□□ -0.31
VPS39-203ENST00000561797 INSIG2Q9Y5U4 225 aa13.1□□□□□ -0.31
VPS39-203ENST00000561797 SVEP1Q4LDE5 3571 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 hCG_1807616A0A1W2PRN6 198 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 ZAR1LA6NP61 321 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 C3orf80F5H4A9 247 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 VENTXO95231 258 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 PTBP3O95758 552 aaKnown RBP13.09□□□□□ -0.31
VPS39-203ENST00000561797 ZNF12P17014 697 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 MZT1Q08AG7 82 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 ZNF154Q13106 437 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 SLX4IPQ5VYV7 408 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 C12orf73Q69YU5 71 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 KCTD18Q6PI47 426 aaPredicted RBP13.09□□□□□ -0.31
VPS39-203ENST00000561797 DCDC5Q6ZRR9 648 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 ASRGL1Q7L266 308 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 NLRC3Q7RTR2 1065 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 PLPP7Q8NBV4 271 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 OR8B12Q8NGG6 310 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 ZNF418Q8TF45 676 aaPredicted RBP13.09□□□□□ -0.31
VPS39-203ENST00000561797 IL4I1Q96RQ9 567 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 CIB1Q99828 191 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 MRI1Q9BV20 369 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 PAPOLGQ9BWT3 736 aaKnown RBP13.09□□□□□ -0.31
VPS39-203ENST00000561797 NIPAL2Q9H841 368 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 COPS3Q9UNS2 423 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 RHBDD3Q9Y3P4 386 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 AUP1Q9Y679 476 aa13.09□□□□□ -0.31
VPS39-203ENST00000561797 SAC3D1A6NKF1 404 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 FSTL3O95633 263 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 GNALP38405 381 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 PITPNBP48739 271 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 PSMA6P60900 246 aaKnown RBP13.08□□□□□ -0.32
VPS39-203ENST00000561797 OR8B8Q15620 311 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 ARMCX4Q5H9R4 360 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 CCDC121Q6ZUS5 278 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 MEPCEQ7L2J0 689 aaKnown RBP13.08□□□□□ -0.32
VPS39-203ENST00000561797 CSNK2A3Q8NEV1 391 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 TMEM163Q8TC26 289 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 PYDC1Q8WXC3 89 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 C22orf15Q8WYQ4 148 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 CENPNQ96H22 339 aaPredicted RBP13.08□□□□□ -0.32
VPS39-203ENST00000561797 LYZL4Q96KX0 146 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 RGCCQ9H4X1 137 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 OAZ3Q9UMX2 235 aa13.08□□□□□ -0.32
VPS39-203ENST00000561797 PRR32B1ATL7 298 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 LGALS8O00214 317 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 CPT2P23786 658 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 ACKR3P25106 362 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 POLR2IP36954 125 aaKnown RBP13.07□□□□□ -0.32
VPS39-203ENST00000561797 POU4F2Q12837 409 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 NXNL2Q5VZ03 156 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 WDR86Q86TI4 376 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 BPIFB2Q8N4F0 458 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 PIGCQ92535 297 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 CNN2Q99439 309 aaKnown RBP13.07□□□□□ -0.32
VPS39-203ENST00000561797 SLC6A7Q99884 636 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 MROQ9BYG7 248 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 RIBC2Q9H4K1 309 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 CLN8Q9UBY8 286 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 ENOPH1Q9UHY7 261 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 IKZF2Q9UKS7 526 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms