RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 EIF5AL1Q6IS14 154 aaKnown RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 MEX3BQ6ZN04 569 aaKnown RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 ZNF813Q6ZN06 617 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 NUP54Q7Z3B4 507 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 TCTEX1D2Q8WW35 142 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 TMEM59Q9BXS4 323 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 F5H5K5 113 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 BLVRBP30043 206 aaPredicted RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 CAV2P51636 162 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 CYCSP99999 105 aaKnown RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 TMEM128Q5BJH2 165 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 C20orf196Q8IYI0 205 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 ZNF283Q8N7M2 679 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 FGF14Q92915 247 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 HDHD3Q9BSH5 251 aaPredicted RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 C5orf66Q9H5L9 145 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 KCNJ16Q9NPI9 418 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 POLE3Q9NRF9 147 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 PARPBPQ9NWS1 579 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 WIF1Q9Y5W5 379 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 PRRC2CQ9Y520 2896 aaKnown RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 TMEM150CB9EJG8 249 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 PHYHO14832 338 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 MDKP21741 143 aaPredicted RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 GFERP55789 205 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 TLE3Q04726 772 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 FAM57BQ71RH2 274 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 MISPQ8IVT2 679 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 SP7Q8TDD2 431 aaPredicted RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 BADQ92934 168 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 PIGTQ969N2 578 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 LRFN5Q96NI6 719 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 ZNF251Q9BRH9 671 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 MESP1Q9BRJ9 268 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 PDE7BQ9NP56 450 aa10.09□□□□□ -0.79
LDLR-208ENST00000558518 C14orf166Q9Y224 244 aaKnown RBP10.09□□□□□ -0.79
LDLR-208ENST00000558518 CCDC85CA6NKD9 419 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 CLN5O75503 358 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 CD1AP06126 327 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 GPR3P46089 330 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 BIDP55957 195 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 TMEM33P57088 247 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 C1orf140Q5VVS0 124 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 C5orf46Q6UWT4 87 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 TMEM182Q6ZP80 229 aaPredicted RBP10.08□□□□□ -0.8
LDLR-208ENST00000558518 CATSPERDQ86XM0 798 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 FLVCR1-AS1Q8TAF5 88 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 BSCL2Q96G97 398 aaPredicted RBP10.08□□□□□ -0.8
LDLR-208ENST00000558518 LIN37Q96GY3 246 aaPredicted RBP10.08□□□□□ -0.8
LDLR-208ENST00000558518 SLCO5A1Q9H2Y9 848 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 CYTL1Q9NRR1 136 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 PRODH2Q9UF12 536 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 R4GMQ9 66 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 LINC01553A4QN01 128 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 HNRNPA1P09651 372 aaKnown RBP eCLIP10.08□□□□□ -0.8
LDLR-208ENST00000558518 S100A2P29034 98 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 NTSR1P30989 418 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 SFTPDP35247 375 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 HAGHQ16775 308 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 CDPF1Q6NVV7 123 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 LRRC75AQ8NAA5 344 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 OR5D14Q8NGL3 314 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 TRAV36DV7A0A075B6V5 113 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 RNF224P0DH78 156 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 USF2Q15853 346 aaPredicted RBP10.08□□□□□ -0.8
LDLR-208ENST00000558518 MST1LQ2TV78 715 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 TMEM244Q5VVB8 128 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 SLC22A24Q8N4F4 322 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 PAQR4Q8N4S7 273 aaPredicted RBP10.08□□□□□ -0.8
LDLR-208ENST00000558518 C19orf47Q8N9M1 422 aaKnown RBP10.08□□□□□ -0.8
LDLR-208ENST00000558518 FNDC9Q8TBE3 224 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 ASB17Q8WXJ9 295 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 SLAMF6Q96DU3 332 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 SCARF2Q96GP6 870 aaPredicted RBP10.08□□□□□ -0.8
LDLR-208ENST00000558518 YBX2Q9Y2T7 364 aaKnown RBP10.08□□□□□ -0.8
LDLR-208ENST00000558518 CACNA1DQ01668 2161 aa10.08□□□□□ -0.8
LDLR-208ENST00000558518 ZNF217O75362 1048 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 AKT2P31751 481 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 GSK3AP49840 483 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 RRADP55042 308 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 HIST2H3AQ71DI3 136 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 OR9K2Q8NGE7 335 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 OR2AJ1Q8NGZ0 328 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 EDAQ92838 391 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 ZNF407Q9C0G0 2248 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 ZNF850A8MQ14 1090 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 CDRT15L2A8MXV6 281 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 FOXS1O43638 330 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 RAD51DO75771 328 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 FAM157CP0CG43 387 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 MYF5P13349 255 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 SPINK2P20155 84 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 CSRP1P21291 193 aaKnown RBP10.07□□□□□ -0.8
LDLR-208ENST00000558518 LAP3P28838 519 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 GUK1Q16774 197 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 CLEC12BQ2HXU8 276 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 SLC30A7Q8NEW0 376 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 OR14K1Q8NGZ2 314 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 DYRK2Q92630 601 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 SH3BGRL3Q9H299 93 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 164.5 ms