RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 ZNF407Q9C0G0 2248 aa11.72□□□□□ -0.53
PTCH1-215ENST00000547672 hCG_2014768A0A024R1R8 64 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 A0A096LPE4 126 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 A0A1W2PPZ6 126 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 GGT3PA6NGU5 568 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 EEF1E1O43324 174 aaKnown RBP11.71□□□□□ -0.53
PTCH1-215ENST00000547672 RBBP9O75884 186 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 DBHP09172 617 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 ABOP16442 354 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 CDK2P24941 298 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 PRSS3P35030 304 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 TIMP3P35625 211 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 ALDH3B1P43353 468 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 TBC1D28Q2M2D7 210 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 NAA40Q86UY6 237 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 ANGPTL5Q86XS5 388 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 LYPD6Q86Y78 171 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 CNEP1R1Q8N9A8 125 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 OR52N4Q8NGI2 321 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 OR5M9Q8NGP3 310 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 SNRNP27Q8WVK2 155 aaKnown RBP11.71□□□□□ -0.53
PTCH1-215ENST00000547672 POM121Q96HA1 1249 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 LYZL4Q96KX0 146 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 USB1Q9BQ65 265 aaKnown RBP11.71□□□□□ -0.53
PTCH1-215ENST00000547672 URM1Q9BTM9 101 aaKnown RBP11.71□□□□□ -0.53
PTCH1-215ENST00000547672 CST11Q9H112 138 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 CNTD2Q9H8S5 307 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 PRSS50Q9UI38 385 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 PROCRQ9UNN8 238 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 LHX6Q9UPM6 363 aa11.71□□□□□ -0.53
PTCH1-215ENST00000547672 TMEM272A0A1B0GTI8 110 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 FUOMA2VDF0 154 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 C5orf49A4QMS7 147 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 PRRG2O14669 202 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 CTAG2O75638 210 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 HLA-HP01893 362 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 TPOP07202 933 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 PATE4P0C8F1 98 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 TAS2R20P59543 309 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 RBPJQ06330 500 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 SNTB2Q13425 540 aaKnown RBP11.7□□□□□ -0.54
PTCH1-215ENST00000547672 TBRG1Q3YBR2 411 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 C1orf185Q5T7R7 199 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 C9orf135Q5VTT2 229 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 AWAT2Q6E213 333 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 ASPHD2Q6ICH7 369 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 LHFPL2Q6ZUX7 228 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 KRT74Q7RTS7 529 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 CPEB3Q8NE35 698 aaKnown RBP11.7□□□□□ -0.54
PTCH1-215ENST00000547672 OR51A2Q8NGJ7 313 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 FAM57AQ8TBR7 257 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 SLC7A6Q92536 515 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 PIGTQ969N2 578 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 ACTR6Q9GZN1 396 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 B3GNT2Q9NY97 397 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 NPAP1Q9NZP6 1156 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 CGGBP1Q9UFW8 167 aaPredicted RBP11.7□□□□□ -0.54
PTCH1-215ENST00000547672 KCNN3Q9UGI6 736 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 ZNF107Q9UII5 783 aaPredicted RBP11.7□□□□□ -0.54
PTCH1-215ENST00000547672 MRPS28Q9Y2Q9 187 aaKnown RBP11.7□□□□□ -0.54
PTCH1-215ENST00000547672 CACNG2Q9Y698 323 aa11.7□□□□□ -0.54
PTCH1-215ENST00000547672 TNRC6AQ8NDV7 1962 aaKnown RBP11.69□□□□□ -0.54
PTCH1-215ENST00000547672 ZNF816-ZNF321PA0A0X1KG74 233 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 LINC00854A0A1B0GVQ3 168 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 H3BUI4 141 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 LDLRAD4O15165 306 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 PLA2G10O15496 165 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 LMX1BO60663 402 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 ZNF780AO75290 641 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-215ENST00000547672 IL18BPO95998 194 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 NRASP01111 189 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 CSF1P09603 554 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 TMIGD3P0DMS9 266 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-215ENST00000547672 PTGFRP43088 359 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 KIR2DL2P43627 348 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-215ENST00000547672 PTH2RP49190 550 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 FUT6P51993 359 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 ATP1B3P54709 279 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 ACTBP60709 375 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 ACTG1P63261 375 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 KISS1Q15726 138 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 SNAI3Q3KNW1 292 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 RTL6Q6ICC9 239 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 SSX8Q7RTT4 187 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 MRPL21Q7Z2W9 205 aaKnown RBP11.69□□□□□ -0.54
PTCH1-215ENST00000547672 NRARPQ7Z6K4 114 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 ZNF101Q8IZC7 436 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 OR5AS1Q8N127 324 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 STEAP2Q8NFT2 490 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 FGFBP3Q8TAT2 258 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 YIPF5Q969M3 257 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 POM121L2Q96KW2 1035 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 HIST1H2AAQ96QV6 131 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 C11orf54Q9H0W9 315 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-215ENST00000547672 TP63Q9H3D4 680 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-215ENST00000547672 DPAGT1Q9H3H5 408 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 TP53TG5Q9Y2B4 290 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 NOP16Q9Y3C1 178 aaKnown RBP11.69□□□□□ -0.54
PTCH1-215ENST00000547672 CFAP54Q96N23 3096 aa11.69□□□□□ -0.54
PTCH1-215ENST00000547672 TRAV18A0A075B6X5 111 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms