RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 KISS1RQ969F8 398 aaPredicted RBP13.98□□□□□ -0.17
CUX1-211ENST00000546411 ZNF649Q9BS31 505 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 LANCL2Q9NS86 450 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 FREM3P0C091 2139 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 ZNF587BE7ETH6 402 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 MASP2O00187 686 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 TGFBR3Q03167 851 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 PPP1R1AQ13522 171 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 VHLLQ6RSH7 139 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 SLC25A26Q70HW3 274 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 SLC25A45Q8N413 288 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 ZNF275Q9NSD4 429 aaPredicted RBP13.97□□□□□ -0.17
CUX1-211ENST00000546411 KCNIP1Q9NZI2 227 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 ZNF354AO60765 605 aaPredicted RBP13.97□□□□□ -0.17
CUX1-211ENST00000546411 TGM6O95932 706 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 PNPP00491 289 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 BGLAPP02818 100 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 CELA2AP08217 269 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 KCNJ15Q99712 375 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 C5orf49A4QMS7 147 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 ZNF814B7Z6K7 855 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 KRBOX1C9JBD0 128 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 CCL11P51671 97 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 AGFG1P52594 562 aaKnown RBP13.97□□□□□ -0.17
CUX1-211ENST00000546411 AKR1C8PQ5T2L2 129 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 LILRB2Q8N423 598 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 EXD3Q8N9H8 876 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 NANOS1Q8WY41 292 aaKnown RBP13.97□□□□□ -0.17
CUX1-211ENST00000546411 REEP6Q96HR9 211 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 TMPRSS13Q9BYE2 586 aa13.97□□□□□ -0.17
CUX1-211ENST00000546411 PCDHGA9Q9Y5G4 932 aaKnown RBP13.97□□□□□ -0.17
CUX1-211ENST00000546411 TMEM200CA6NKL6 621 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 HSPB2A8KAH6 182 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 NRASP01111 189 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 HLA-DQB1P01920 261 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 ASAH2BP0C7U1 165 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 CD46P15529 392 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 HSPB2Q16082 182 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 SLC22A25Q6T423 547 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 OR51H1Q8NH63 302 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 MAFAQ8NHW3 353 aaPredicted RBP13.96□□□□□ -0.17
CUX1-211ENST00000546411 UCN2Q96RP3 112 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 NLRC5Q86WI3 1866 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 LTBRP36941 435 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 SUMO3P55854 103 aaPredicted RBP13.96□□□□□ -0.17
CUX1-211ENST00000546411 SNTB1Q13884 538 aaKnown RBP13.96□□□□□ -0.17
CUX1-211ENST00000546411 KLF9Q13886 244 aaPredicted RBP13.96□□□□□ -0.17
CUX1-211ENST00000546411 KISS1Q15726 138 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 CEBPEQ15744 281 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.96□□□□□ -0.17
CUX1-211ENST00000546411 ZNF709Q8N972 641 aa13.96□□□□□ -0.17
CUX1-211ENST00000546411 AKAP6Q13023 2319 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 IGKV1D-42A0A075B6H8 117 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 ITGB2P05107 769 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 OR5H8P0DN80 308 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 PNLIPP16233 465 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 KIR3DL2P43630 455 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 UBALD1Q8TB05 177 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 ZC3HAV1LQ96H79 300 aaKnown RBP13.96□□□□□ -0.18
CUX1-211ENST00000546411 KCNJ16Q9NPI9 418 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 NTMQ9P121 344 aa13.96□□□□□ -0.18
CUX1-211ENST00000546411 A0A087WV48 116 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 MEX3AA1L020 520 aaKnown RBP13.95□□□□□ -0.18
CUX1-211ENST00000546411 ZNHIT1O43257 154 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 KLF4O43474 513 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 CBR3O75828 277 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 RPS4Y1P22090 263 aaKnown RBP13.95□□□□□ -0.18
CUX1-211ENST00000546411 NR2C2APQ86WQ0 139 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 C9orf62Q8N4C0 152 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 TERB2Q8NHR7 220 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 SCMH1Q96GD3 660 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 SPIN2AQ99865 258 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 SPIN2BQ9BPZ2 258 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 TRAPPC2LQ9UL33 140 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 OR2M5A3KFT3 312 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 XRCC2O43543 280 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 BPNT1O95861 308 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 C6orf201Q7Z4U5 140 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 LYG2Q86SG7 212 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 FAM213BQ8TBF2 198 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 APH1AQ96BI3 265 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 MOB1AQ9H8S9 216 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 CA10Q9NS85 328 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 WASF3Q9UPY6 502 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 THSD7BQ9C0I4 1608 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 GRPP07492 148 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 CCL2P13500 99 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 CSF2RBP32927 897 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 LGALSLQ3ZCW2 172 aaPredicted RBP13.95□□□□□ -0.18
CUX1-211ENST00000546411 ELFN2Q5R3F8 820 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 C19orf48Q6RUI8 117 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 ACOT7LQ6ZUV0 252 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 SLC38A9Q8NBW4 561 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 ZNF501Q96CX3 271 aaPredicted RBP13.95□□□□□ -0.18
CUX1-211ENST00000546411 LMX1BO60663 402 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 ZNF250P15622 560 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 SELENOVP59797 346 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 RBM39Q14498 530 aaKnown RBP13.95□□□□□ -0.18
CUX1-211ENST00000546411 ZNF774Q6NX45 483 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 FBXL14Q8N1E6 418 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms