RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ASH2LQ9UBL3 628 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 MRPS7Q9Y2R9 242 aaKnown RBP10.42□□□□□ -0.74
CLIP1-208ENST00000537004 HIVEP1P15822 2718 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF878C9JN71 531 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 MSTNO14793 375 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 CTAG2O75638 210 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 SYNGR4O95473 234 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 UBCP0CG48 685 aaKnown RBP10.41□□□□□ -0.74
CLIP1-208ENST00000537004 RCVRNP35243 200 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 MMP15P51511 669 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 IFITM2Q01629 132 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 PHYHD1Q5SRE7 291 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 C10orf128Q5T292 105 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 TMEM244Q5VVB8 128 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 FAM214BQ7L5A3 538 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 OR13C3Q8NGS6 347 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 LRRC46Q96FV0 321 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 PIGMQ9H3S5 423 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 LIME1Q9H400 295 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 CKLFQ9UBR5 152 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 STEAP1Q9UHE8 339 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 ETV7Q9Y603 341 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 ANKRD34BA5PLL1 514 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 P2RY10O00398 339 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 CRHP06850 196 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 FCGR2AP12318 317 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 FSTP19883 344 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 SELENOPP49908 381 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF133P52736 654 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-208ENST00000537004 AGAP6Q5VW22 663 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 C22orf34Q6ZV56 151 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 RHOUQ7L0Q8 258 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 IZUMO1Q8IYV9 350 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 SYNPRQ8TBG9 265 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF775Q96BV0 537 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF486Q96H40 463 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-208ENST00000537004 ABCG5Q9H222 651 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 C12orf49Q9H741 205 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 TAS2R4Q9NYW5 299 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 FOXD3Q9UJU5 478 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-208ENST00000537004 FOXJ3Q9UPW0 622 aa10.41□□□□□ -0.74
CLIP1-208ENST00000537004 FAM240BA0A1B0GVZ2 78 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 RER1O15258 196 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 TTRP02766 147 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 ACSM4P0C7M7 580 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 MSR1P21757 451 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 CFPP27918 469 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 HSD11B1P28845 292 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 CCKARP32238 428 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 GUCA1AP43080 201 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-208ENST00000537004 ART1P52961 327 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 SCAND1P57086 179 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 PSMA6P60900 246 aaKnown RBP10.4□□□□□ -0.74
CLIP1-208ENST00000537004 DGCR2P98153 550 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 TAF13Q15543 124 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 SGCAQ16586 387 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 RNASE12Q5GAN4 147 aaKnown RBP10.4□□□□□ -0.74
CLIP1-208ENST00000537004 PDSS1Q5T2R2 415 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 HACD4Q5VWC8 232 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 PLET1Q6UQ28 207 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 TUSC5Q8IXB3 177 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 ELMOD2Q8IZ81 293 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 RAB40AQ8WXH6 277 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 YIPF5Q969M3 257 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 S100A16Q96FQ6 103 aaKnown RBP10.4□□□□□ -0.74
CLIP1-208ENST00000537004 GMPPAQ96IJ6 420 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF416Q9BWM5 594 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 PBOV1Q9GZY1 135 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 NELFAQ9H3P2 528 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 RNF121Q9H920 327 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 PNRC2Q9NPJ4 139 aaKnown RBP10.4□□□□□ -0.74
CLIP1-208ENST00000537004 PAQR5Q9NXK6 330 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-208ENST00000537004 RABL2AQ9UBK7 228 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-208ENST00000537004 PROCRQ9UNN8 238 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 RABL2BQ9UNT1 228 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 ROS1P08922 2347 aa10.4□□□□□ -0.74
CLIP1-208ENST00000537004 MEIOCA2RUB1 952 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 A6NNC1 897 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 CTDSPLO15194 276 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 ITGA5P08648 1049 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 FAM157BP0CG42 384 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 IGFBP3P17936 291 aaPredicted RBP10.4□□□□□ -0.75
CLIP1-208ENST00000537004 LSM6P62312 80 aaKnown RBP10.4□□□□□ -0.75
CLIP1-208ENST00000537004 SORDQ00796 357 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 GPR176Q14439 515 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 SLC36A2Q495M3 483 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 FOXL2NBQ6ZUU3 175 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 GLCCI1Q86VQ1 547 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 SERPINA12Q8IW75 414 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 C20orf196Q8IYI0 205 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 DUSP18Q8NEJ0 188 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 CPNE4Q96A23 557 aaPredicted RBP10.4□□□□□ -0.75
CLIP1-208ENST00000537004 CLEC4MQ9H2X3 399 aaPredicted RBP10.4□□□□□ -0.75
CLIP1-208ENST00000537004 NIPAL2Q9H841 368 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 DDX28Q9NUL7 540 aaKnown RBP10.4□□□□□ -0.75
CLIP1-208ENST00000537004 FLVCR1Q9Y5Y0 555 aa10.4□□□□□ -0.75
CLIP1-208ENST00000537004 PRR14LQ5THK1 2151 aa10.39□□□□□ -0.75
CLIP1-208ENST00000537004 ZNF716A6NP11 495 aa10.39□□□□□ -0.75
CLIP1-208ENST00000537004 SLC17A2O00624 439 aa10.39□□□□□ -0.75
CLIP1-208ENST00000537004 DHHO43323 396 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms