RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ACTG1P63261 375 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 BNIP1Q12981 228 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.13□□□□□ -0.63
VPS28-211ENST00000530790 CPOQ8IVL8 374 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 BBS1Q8NFJ9 593 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 THEM6Q8WUY1 208 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 C22orf15Q8WYQ4 148 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 PGAM5Q96HS1 289 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 PRRG3Q9BZD7 231 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 BRD7Q9NPI1 651 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 TRIM36Q9NQ86 728 aa11.13□□□□□ -0.63
VPS28-211ENST00000530790 IGHV2-70DA0A0C4DH43 119 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 hCG_1807616A0A1W2PRN6 198 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 GRPP07492 148 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 CD80P33681 288 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 GNALP38405 381 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 PSMA6P60900 246 aaKnown RBP11.12□□□□□ -0.63
VPS28-211ENST00000530790 FAM3AP98173 230 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 OR8B8Q15620 311 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 SNCBQ16143 134 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 SNAPC1Q16533 368 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 TMEM236Q5W0B7 351 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 LRRN1Q6UXK5 716 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 RBMS3Q6XE24 437 aaKnown RBP11.12□□□□□ -0.63
VPS28-211ENST00000530790 PRSS45Q7RTY3 260 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 PARP8Q8N3A8 854 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 FTMTQ8N4E7 242 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 BOLLQ8N9W6 283 aaKnown RBP11.12□□□□□ -0.63
VPS28-211ENST00000530790 C19orf18Q8NEA5 215 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 PAPOLGQ9BWT3 736 aaKnown RBP11.12□□□□□ -0.63
VPS28-211ENST00000530790 RGCCQ9H4X1 137 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 NTN4Q9HB63 628 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 C1orf123Q9NWV4 160 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 NUP50Q9UKX7 468 aa11.12□□□□□ -0.63
VPS28-211ENST00000530790 OOEPA6NGQ2 149 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 C3orf80F5H4A9 247 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 LGALS8O00214 317 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 PPIAL4GP0DN37 164 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 SLC2A5P22732 501 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 GSK3AP49840 483 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 NPY4RP50391 375 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 CRISP1P54107 249 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 HOXA4Q00056 320 aaPredicted RBP11.11□□□□□ -0.63
VPS28-211ENST00000530790 PAX2Q02962 417 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 PAX8Q06710 450 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 APOFQ13790 326 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 LCN1P1Q5VSP4 162 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 C1orf146Q5VVC0 180 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 SFRP4Q6FHJ7 346 aaPredicted RBP11.11□□□□□ -0.63
VPS28-211ENST00000530790 FAHD1Q6P587 224 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 LYPD2Q6UXB3 125 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 KRT77Q7Z794 578 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 CSNK2A3Q8NEV1 391 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 OR5K1Q8NHB7 308 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 FAM216AQ8WUB2 273 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 RAB40AQ8WXH6 277 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 UTP4Q969X6 686 aaKnown RBP11.11□□□□□ -0.63
VPS28-211ENST00000530790 SGK3Q96BR1 496 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 TECTBQ96PL2 329 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 NIPAL2Q9H841 368 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 TVP23BQ9NYZ1 205 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 LAMP5Q9UJQ1 280 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 KLHDC2Q9Y2U9 406 aa11.11□□□□□ -0.63
VPS28-211ENST00000530790 TRAV38-1A0A0B4J264 116 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ANXA2P2A6NMY6 339 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ENSAO43768 121 aaKnown RBP11.1□□□□□ -0.63
VPS28-211ENST00000530790 ATP5HO75947 161 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 DAPP51397 102 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ESRRGP62508 458 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 IL5RAQ01344 420 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ATP6AP1Q15904 470 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 KLF17Q5JT82 389 aaPredicted RBP11.1□□□□□ -0.63
VPS28-211ENST00000530790 WDR25Q64LD2 544 aaPredicted RBP11.1□□□□□ -0.63
VPS28-211ENST00000530790 C12orf54Q6X4T0 127 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ZNF826PQ6ZT77 177 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 NUDT16L1Q9BRJ7 211 aaKnown RBP11.1□□□□□ -0.63
VPS28-211ENST00000530790 YIPF3Q9GZM5 350 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ABCB9Q9NP78 766 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 KRT84Q9NSB2 600 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ZNF319Q9P2F9 582 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ERVK-18Q9QC07 812 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ZNF69Q9UC07 566 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ZNF391Q9UJN7 358 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 LRP12Q9Y561 859 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 ANK2Q01484 3957 aa11.1□□□□□ -0.63
VPS28-211ENST00000530790 TRAV40A0A0B4J280 105 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 G3V2T6 193 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 ADAM20O43506 726 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 NDUFA2O43678 99 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 MRPL3P09001 348 aaKnown RBP11.09□□□□□ -0.63
VPS28-211ENST00000530790 FCGR1AP12314 374 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 ALOX5APP20292 161 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 FASP25445 335 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 PSMB10P40306 273 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 PTGES3Q15185 160 aaKnown RBP11.09□□□□□ -0.63
VPS28-211ENST00000530790 KCTD18Q6PI47 426 aaPredicted RBP11.09□□□□□ -0.63
VPS28-211ENST00000530790 ZNF841Q6ZN19 808 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 WDR86Q86TI4 376 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 GCSAMQ8N6F7 178 aa11.09□□□□□ -0.63
VPS28-211ENST00000530790 SIGLECL1Q8N7X8 197 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms