RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 FAM184AQ8NB25 1140 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 INO80EQ8NBZ0 244 aaPredicted RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 OR6Q1Q8NGQ2 317 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 OR52P1PQ8NH57 321 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 C17orf50Q8WW18 174 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 TCEAL3Q969E4 200 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 PTX4Q96A99 478 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 ISOC2Q96AB3 205 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 L3HYPDHQ96EM0 354 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 SGTBQ96EQ0 304 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 UBE2E2Q96LR5 201 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 JSRP1Q96MG2 331 aaPredicted RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CDX2Q99626 313 aaPredicted RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 HSD17B10Q99714 261 aaKnown RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 RNF5Q99942 180 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 TDRD3Q9H7E2 651 aaKnown RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 ZNF442Q9H7R0 627 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 FANCEQ9HB96 536 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 SLC39A1Q9NY26 324 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 THADAQ6YHU6 1953 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 OTOGLQ3ZCN5 2332 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 IGKV1-27A0A075B6S5 117 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 SMIM26A0A096LP01 95 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 A0A1B0GUH1 482 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 A0A1W2PRD5 423 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 TRDMT1O14717 391 aaKnown RBP1.26□□□□□ -2.21
CPSF3-205ENST00000489629 SLC22A5O76082 557 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 FARS2O95363 451 aaKnown RBP1.26□□□□□ -2.21
CPSF3-205ENST00000489629 CCNE2O96020 404 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 HLA-DQA1P01909 254 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 MBP02144 154 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 CD74P04233 296 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 KLK1P06870 262 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 ZNF806P0C7X5 589 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 TCP1P17987 556 aaKnown RBP1.26□□□□□ -2.21
CPSF3-205ENST00000489629 PMCHP20382 165 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 LOXP28300 417 aaPredicted RBP1.26□□□□□ -2.21
CPSF3-205ENST00000489629 PPICP45877 212 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 GPR1P46091 355 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 CXCL12P48061 93 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 CDK5Q00535 292 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 CDC20Q12834 499 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 ART3Q13508 389 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 COX19Q49B96 90 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 NKAIN1Q4KMZ8 207 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 DNLZQ5SXM8 178 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 SNX20Q7Z614 316 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 VTCN1Q7Z7D3 282 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 WDFY1Q8IWB7 410 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 VKORC1L1Q8N0U8 176 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 NECAP1Q8NC96 275 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 FBXO36Q8NEA4 188 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 OR51L1Q8NGJ5 315 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 LILRB4Q8NHJ6 448 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 CIRBP-AS1Q8TBR5 109 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 TCP10LQ8TDR4 215 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 PIH1D2Q8WWB5 315 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 TFGQ92734 400 aaPredicted RBP1.26□□□□□ -2.21
CPSF3-205ENST00000489629 RAB1CQ92928 201 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 OR10C1Q96KK4 312 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 C9orf72Q96LT7 481 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 CSPG4P5Q96PW8 444 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 AGMATQ9BSE5 352 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 SLIRPQ9GZT3 109 aaKnown RBP1.26□□□□□ -2.21
CPSF3-205ENST00000489629 IL22Q9GZX6 179 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 DEFB129Q9H1M3 183 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 TMEM27Q9HBJ8 222 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 SLC38A10Q9HBR0 1119 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 MRM3Q9HC36 420 aaKnown RBP1.26□□□□□ -2.21
CPSF3-205ENST00000489629 CD209Q9NNX6 404 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 MED4Q9NPJ6 270 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 FBXO8Q9NRD0 319 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 C8orf17Q9NRJ1 99 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 DDX19BQ9UMR2 479 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 HYOU1Q9Y4L1 999 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 SAR1BQ9Y6B6 198 aa1.26□□□□□ -2.21
CPSF3-205ENST00000489629 MROH5Q6ZUA9 1318 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 IGKV3D-11A0A0A0MRZ8 115 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 TRAV19A0A0A6YYK7 116 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 IGHV1-69DA0A0B4J2H0 117 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 C7orf66A4D0T2 115 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 C5orf63A6NC05 138 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 KRBOX1C9JBD0 128 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 ANKRD65E5RJM6 399 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 CDC40O60508 579 aaKnown RBP eCLIP1.25□□□□□ -2.21
CPSF3-205ENST00000489629 SLC16A7O60669 478 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 MPDU1O75352 247 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 GLSO94925 669 aaPredicted RBP1.25□□□□□ -2.21
CPSF3-205ENST00000489629 SNAI1O95863 264 aaPredicted RBP1.25□□□□□ -2.21
CPSF3-205ENST00000489629 STAG3L2P0CL84 134 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 PRKACAP17612 351 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 PFN2P35080 140 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 POLR2IP36954 125 aaKnown RBP1.25□□□□□ -2.21
CPSF3-205ENST00000489629 MYCNOSP40205 109 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 PSMD4P55036 377 aaKnown RBP1.25□□□□□ -2.21
CPSF3-205ENST00000489629 RPL23P62829 140 aaKnown RBP1.25□□□□□ -2.21
CPSF3-205ENST00000489629 PAFAH1B2P68402 229 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 CRADDP78560 199 aa1.25□□□□□ -2.21
CPSF3-205ENST00000489629 ZNF816Q0VGE8 651 aaPredicted RBP1.25□□□□□ -2.21
CPSF3-205ENST00000489629 ZNF829Q3KNS6 432 aaPredicted RBP1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms