RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 SLC29A1Q99808 456 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 RBM4BQ9BQ04 359 aaKnown RBP4.81□□□□□ -1.64
CUX1-208ENST00000485792 ZNF649Q9BS31 505 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 CDADC1Q9BWV3 514 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 TTTY10Q9BZA0 68 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 YIPF3Q9GZM5 350 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 TLNRD1Q9H1K6 362 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 SEMA6AQ9H2E6 1030 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 OPA3Q9H6K4 179 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 NIPAL2Q9H841 368 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 ADGRL4Q9HBW9 690 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 MSL2Q9HCI7 577 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 S100A14Q9HCY8 104 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 KRT84Q9NSB2 600 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 ENOPH1Q9UHY7 261 aa4.81□□□□□ -1.64
CUX1-208ENST00000485792 IGHV3-64DA0A0J9YX35 117 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 A0A0U1RQV5 110 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 hCG_38984A0A1B0GV85 526 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 A0A1B0GW55 424 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 A0A1W2PPW3 197 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 PLSCR5A0PG75 271 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 SAC3D1A6NKF1 404 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 CD300LBA8K4G0 201 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 A8MXK9 166 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 F5H5K5 113 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 XRCC2O43543 280 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 GMDSO60547 372 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 ZNF254O75437 659 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 APOL3O95236 402 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 IGHV2-5P01817 119 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 APOC1P02654 83 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 MT-ND5P03915 603 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 TFF1P04155 84 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 LYNP07948 512 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 SBK2P0C263 348 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 DUX4L2P0CJ85 424 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 DUX4L3P0CJ86 424 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 DUX4L4P0CJ87 422 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 DUX4L5P0CJ88 424 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 DUX4L6P0CJ89 424 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 DUX4L7P0CJ90 424 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 PAICSP22234 425 aaKnown RBP4.8□□□□□ -1.64
CUX1-208ENST00000485792 ACKR3P25106 362 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 POU1F1P28069 291 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 SLC15A1P46059 708 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 GZMKP49863 264 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 ALDH3A2P51648 485 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 APOFQ13790 326 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 EIF2B1Q14232 305 aaKnown RBP4.8□□□□□ -1.64
CUX1-208ENST00000485792 TMEM155Q4W5P6 130 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 FAM201AQ5SY85 155 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 GLYATL3Q5SZD4 288 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 CYB5R2Q6BCY4 276 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 OR2T2Q6IF00 324 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 CRIP3Q6Q6R5 217 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 DUX4L9Q6RFH8 374 aaPredicted RBP4.8□□□□□ -1.64
CUX1-208ENST00000485792 USP51Q70EK9 711 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 RNF144BQ7Z419 303 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 C11orf53Q8IXP5 236 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 C10orf67Q8IYJ2 551 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 ZNF679Q8IYX0 411 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 PQLC1Q8N2U9 271 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 TCEANCQ8N8B7 351 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 OR52H1Q8NGJ2 320 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 OR8J1Q8NGP2 316 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 OR6K6Q8NGW6 343 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 CLDND2Q8NHS1 167 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 RHOXF1Q8NHV9 184 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 SNX33Q8WV41 574 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 APH1BQ8WW43 257 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 PPP1R14AQ96A00 147 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 ZMYND19Q96E35 227 aaPredicted RBP4.8□□□□□ -1.64
CUX1-208ENST00000485792 ELMOD3Q96FG2 381 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 MNTQ99583 582 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 SLC22A4Q9H015 551 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 RGCCQ9H4X1 137 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 SAP30LQ9HAJ7 183 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 TMEM165Q9HC07 324 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 G6PC2Q9NQR9 355 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 MRPS18AQ9NVS2 196 aaKnown RBP4.8□□□□□ -1.64
CUX1-208ENST00000485792 FAM206AQ9NX38 181 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 TVP23BQ9NYZ1 205 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 TREM2Q9NZC2 230 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 MRPL15Q9P015 296 aaKnown RBP4.8□□□□□ -1.64
CUX1-208ENST00000485792 DUX4Q9UBX2 424 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 ZNF391Q9UJN7 358 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 WIPI2Q9Y4P8 454 aa4.8□□□□□ -1.64
CUX1-208ENST00000485792 TRRAPQ9Y4A5 3859 aa4.79□□□□□ -1.64
CUX1-208ENST00000485792 A0A1B0GTI1 187 aa4.79□□□□□ -1.64
CUX1-208ENST00000485792 A8MV72 311 aaPredicted RBP4.79□□□□□ -1.64
CUX1-208ENST00000485792 B4DSR2 109 aa4.79□□□□□ -1.64
CUX1-208ENST00000485792 TMEM178BH3BS89 294 aa4.79□□□□□ -1.64
CUX1-208ENST00000485792 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.79□□□□□ -1.64
CUX1-208ENST00000485792 EI24O14681 340 aa4.79□□□□□ -1.64
CUX1-208ENST00000485792 CASQ2O14958 399 aaPredicted RBP4.79□□□□□ -1.64
CUX1-208ENST00000485792 SPRY3O43610 288 aa4.79□□□□□ -1.64
CUX1-208ENST00000485792 TIMM8AO60220 97 aaPredicted RBP4.79□□□□□ -1.64
CUX1-208ENST00000485792 CIB2O75838 187 aa4.79□□□□□ -1.64
CUX1-208ENST00000485792 PNPP00491 289 aa4.79□□□□□ -1.64
CUX1-208ENST00000485792 CST4P01036 141 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms