RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 OR9Q1Q8NGQ5 310 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 MOSPD2Q8NHP6 518 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 ANGPTL6Q8NI99 470 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 LRRC8CQ8TDW0 803 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 TWIST2Q8WVJ9 160 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 DNAJA4Q8WW22 397 aaPredicted RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 DCUN1D4Q92564 292 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 TMEM19Q96HH6 336 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 RBM14Q96PK6 669 aaKnown RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 CDRT15Q96T59 188 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 EPYCQ99645 322 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 THAP7Q9BT49 309 aaPredicted RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 TMEM43Q9BTV4 400 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 ADAT1Q9BUB4 502 aaKnown RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 EVA1AQ9H8M9 152 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 HEXA-AS1Q9H8Q6 139 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 POLE4Q9NR33 117 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 PAPOLBQ9NRJ5 636 aaKnown RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 RPS6KB2Q9UBS0 482 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 PFDN2Q9UHV9 154 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.69□□□□□ -1.82
USP4-209ENST00000475873 TBL2Q9Y4P3 447 aaKnown RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 IGKV1D-17A0A075B6S4 117 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 PRSS51A0A1B0GVH4 220 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 A0A1W2PPL8 197 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 MEX3AA1L020 520 aaKnown RBP3.68□□□□□ -1.82
USP4-209ENST00000475873 CD300LBA8K4G0 201 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 CENPBD1B2RD01 187 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 J3QW42 95 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 RER1O15258 196 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 SAP30O75446 220 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 CHRNGP07510 517 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 GSTA1P08263 222 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 NUDT7P0C024 238 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 IGHV1-8P0DP01 117 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 MSR1P21757 451 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 SERPINB5P36952 375 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 AQP2P41181 271 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 POU3F4P49335 361 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 CLDN8P56748 225 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 PCBD1P61457 104 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 GNB1P62873 340 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 CTAG1AP78358 180 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 SLC34A1Q06495 639 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 CD47Q08722 323 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 KIAA0141Q14154 515 aaPredicted RBP3.68□□□□□ -1.82
USP4-209ENST00000475873 OR1Q1Q15612 314 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 C21orf62-AS1Q17RA5 79 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 KRTAP27-1Q3LI81 207 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 SPANXN4Q5MJ08 99 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 ULK3Q6PHR2 472 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 ZYG11AQ6WRX3 759 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 C16orf82Q7Z2V1 217 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 PIGWQ7Z7B1 504 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.68□□□□□ -1.82
USP4-209ENST00000475873 SYT9Q86SS6 491 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 CATSPERDQ86XM0 798 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 SLC7A5P1Q8MH63 180 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 DPP10Q8N608 796 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 ZNF645Q8N7E2 425 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 LINC00469Q8N7U9 141 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 OR11H1Q8NG94 326 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 OR11H6Q8NGC7 330 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 OR1F12Q8NHA8 337 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 C4orf3Q8WVX3 66 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 SLC35B4Q969S0 331 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 APOBEC3DQ96AK3 386 aaPredicted RBP3.68□□□□□ -1.82
USP4-209ENST00000475873 C12orf43Q96C57 262 aaKnown RBP3.68□□□□□ -1.82
USP4-209ENST00000475873 COG8Q96MW5 612 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 RAB3IPQ96QF0 476 aaPredicted RBP3.68□□□□□ -1.82
USP4-209ENST00000475873 PAFAH2Q99487 392 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 VCX3BQ9H321 246 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 TXNIPQ9H3M7 391 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 GNB4Q9HAV0 340 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 MEPEQ9NQ76 525 aaPredicted RBP3.68□□□□□ -1.82
USP4-209ENST00000475873 HAO2Q9NYQ3 351 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 ZNF222Q9UK12 451 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 HHLA2Q9UM44 414 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 ANGPT4Q9Y264 503 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 JRKLQ9Y4A0 524 aa3.68□□□□□ -1.82
USP4-209ENST00000475873 CCDC154A6NI56 674 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 C12orf71A8MTZ7 269 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 MCIDASD6RGH6 385 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 BLOC1S5-TXNDC5H3BN57 136 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 H7C1C5 153 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 I3L521 148 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 KPNA4O00629 521 aaPredicted RBP3.67□□□□□ -1.82
USP4-209ENST00000475873 IMPA2O14732 288 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 GLCEO94923 617 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 OR6A2O95222 327 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 IGF1P05019 195 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 VIMP08670 466 aaKnown RBP3.67□□□□□ -1.82
USP4-209ENST00000475873 ACAA1P09110 424 aaPredicted RBP3.67□□□□□ -1.82
USP4-209ENST00000475873 ALDOCP09972 364 aaKnown RBP3.67□□□□□ -1.82
USP4-209ENST00000475873 TSPAN19P0C672 248 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 ARSBP15848 533 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 CTLA4P16410 223 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 POU1F1P28069 291 aa3.67□□□□□ -1.82
USP4-209ENST00000475873 GCAP28676 217 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms