RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NEURL2Q9BR09 285 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 TXNIPQ9H3M7 391 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 Q9N2K0 584 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF355PQ9NSJ1 428 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 HSD17B6O14756 317 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 SNAI1O95863 264 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 SRP9P49458 86 aaKnown RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 OR8B8Q15620 311 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 FXNQ16595 210 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 DRAM2Q6UX65 266 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 CYHR1Q6ZMK1 362 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 ENSAO43768 121 aaKnown RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 IQCF3P0C7M6 154 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 GPNMBQ14956 572 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 RIMKLAQ8IXN7 391 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 DUSP18Q8NEJ0 188 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 OR10D4PQ8NGN7 298 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 GOT1L1Q8NHS2 421 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 MAP1LC3CQ9BXW4 147 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 SMG9Q9H0W8 520 aaKnown RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 OCIAD1Q9NX40 245 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 NRASP01111 189 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 HRASP01112 189 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 KRASP01116 189 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 MPGP29372 298 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 SUMO3P55854 103 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 PITX1P78337 314 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 LGALSLQ3ZCW2 172 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 SLC16A12Q6ZSM3 486 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 KIAA1958Q8N8K9 716 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 NUDCD2Q8WVJ2 157 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM265A0A087WTH1 108 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 P2RY10O00398 339 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 MBTPS2O43462 519 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF17P17021 662 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM11P17152 192 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 RAD52P43351 418 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 C19orf57Q0VDD7 668 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 SPANXN5Q5MJ07 72 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 LRRC15Q8TF66 581 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 H0YIG0 161 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 PLPP2O43688 288 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 LGALS4P56470 323 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM123Q8N131 208 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 GNB4Q9HAV0 340 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 PAX5Q02548 391 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 OR5I1Q13606 314 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 Q7L0L9 218 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF384Q8TF68 577 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 COL25A1Q9BXS0 654 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM191AQ9H0A3 160 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 TAAR2Q9P1P5 351 aa12.1□□□□□ -0.47
COL6A3-209ENST00000472056 C19orf53Q9UNZ5 99 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-209ENST00000472056 SLC22A20A6NK97 555 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 CDRT15L2A8MXV6 281 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 PDE6DO43924 150 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 SLC25A1P53007 311 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 ACVR1Q04771 509 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 PLAC9Q5JTB6 97 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 ABHD17CQ6PCB6 329 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 GPR137Q96N19 417 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 MACROD1Q9BQ69 325 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 FAM103A1Q9BTL3 118 aaKnown RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 BTF3P20290 206 aaKnown RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 RACK1P63244 317 aaKnown RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 FABP5Q01469 135 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 COL5A1-AS1Q5SY13 56 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 TMEM81Q6P7N7 255 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 BCL7CQ8WUZ0 217 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 TIMD4Q96H15 378 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 PLA2G12AQ9BZM1 189 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 LAT2Q9GZY6 243 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 OCEL1Q9H607 264 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 CNOT1A5YKK6 2376 aaKnown RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 OR10J1P30954 320 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 FAM3BP58499 235 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 CMTM4Q8IZR5 234 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 UBALD1Q8TB05 177 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 HDGFL3Q9Y3E1 203 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 ZNF646O15015 1829 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 DEGS2Q6QHC5 323 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 FER1L6-AS2Q96M78 137 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 LPAR3Q9UBY5 353 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 CHST2Q9Y4C5 530 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 PSMB2P49721 201 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 HERVK_113P61574 105 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 SELENBP1Q13228 472 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 MRM1Q6IN84 353 aaKnown RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 ADPRHL1Q8NDY3 354 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 OR10X1Q8NGY0 326 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 GMPPAQ96IJ6 420 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 LSM2Q9Y333 95 aaKnown RBP12.09□□□□□ -0.47
COL6A3-209ENST00000472056 KLRC4-KLRK1H3BQV0 150 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 SLC25A6P12236 298 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 RHOBP62745 196 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 DCAF12Q5T6F0 453 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 CD300LDQ6UXZ3 194 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 REC114Q7Z4M0 266 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 HSD11B1LQ7Z5J1 315 aa12.09□□□□□ -0.47
COL6A3-209ENST00000472056 CHST14Q8NCH0 376 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms