RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ZNF121P58317 390 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-208ENST00000469802 FGF12P61328 243 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 MZT1Q08AG7 82 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 BAMBIQ13145 260 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 SLC9A3R2Q15599 337 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 KLHL12Q53G59 568 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 TEX36Q5VZQ5 186 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 SFRP4Q6FHJ7 346 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-208ENST00000469802 ZNF826PQ6ZT77 177 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 FAM90A1Q86YD7 464 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 OR52H1Q8NGJ2 320 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 CANT1Q8WVQ1 401 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 SGK3Q96BR1 496 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 REEP6Q96HR9 211 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 MMADHCQ9H3L0 296 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-208ENST00000469802 PRDM13Q9H4Q3 707 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 C14orf119Q9NWQ9 140 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 ZNF319Q9P2F9 582 aa13.54□□□□□ -0.24
COL9A3-208ENST00000469802 TRAV38-1A0A0B4J264 116 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 ANKRD30BLA7E2S9 258 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 TBX1O43435 398 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 NDUFA2O43678 99 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 APOC1P02654 83 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 ANXA2P07355 339 aaKnown RBP13.53□□□□□ -0.24
COL9A3-208ENST00000469802 MMP9P14780 707 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 HOXB6P17509 224 aaKnown RBP13.53□□□□□ -0.24
COL9A3-208ENST00000469802 EGR1P18146 543 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 HSD11B1P28845 292 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 MTNR1AP48039 350 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 FOXL1Q12952 345 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 OR8B8Q15620 311 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 TIGD6Q17RP2 521 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 SHFQ7M4L6 423 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 C11orf53Q8IXP5 236 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 OTOSQ8NHW6 89 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 TECTBQ96PL2 329 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 THTPAQ9BU02 230 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 SP140LQ9H930 580 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 PDP1Q9P0J1 537 aaPredicted RBP13.53□□□□□ -0.24
COL9A3-208ENST00000469802 KAAG1Q9UBP8 84 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 N6AMT1Q9Y5N5 214 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 MGAM2Q2M2H8 2515 aa13.53□□□□□ -0.24
COL9A3-208ENST00000469802 PKD1L1Q8TDX9 2849 aa13.52□□□□□ -0.24
COL9A3-208ENST00000469802 A6NLC8 198 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-208ENST00000469802 PRODHO43272 600 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 ADAM20O43506 726 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 GRPP07492 148 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 PAICSP22234 425 aaKnown RBP13.52□□□□□ -0.25
COL9A3-208ENST00000469802 CFL1P23528 166 aaKnown RBP13.52□□□□□ -0.25
COL9A3-208ENST00000469802 CFHR2P36980 270 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 GSK3AP49840 483 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 PLBD1Q6P4A8 553 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 FAM57BQ71RH2 274 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 HS3ST5Q8IZT8 346 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 BOLLQ8N9W6 283 aaKnown RBP13.52□□□□□ -0.25
COL9A3-208ENST00000469802 OR8S1Q8NH09 359 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 SLC25A28Q96A46 364 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 ZNF747Q9BV97 191 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 TLNRD1Q9H1K6 362 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 RGCCQ9H4X1 137 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 RNPEPL1Q9HAU8 725 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 DNAJC27Q9NZQ0 273 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 ERVK-18Q9QC07 812 aa13.52□□□□□ -0.25
COL9A3-208ENST00000469802 MDFIC2A0A1B0GVS7 189 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 ZNF879B4DU55 563 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 PRR23D1E9PI22 279 aaPredicted RBP13.51□□□□□ -0.25
COL9A3-208ENST00000469802 SELENOFO60613 162 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 TIPRLO75663 272 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 LIPFP07098 398 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 SFTPBP07988 381 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 PRR23D2P0DMB1 279 aaPredicted RBP13.51□□□□□ -0.25
COL9A3-208ENST00000469802 OSMP13725 252 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 SLC2A5P22732 501 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 BPIFB3P59826 476 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 CDK5Q00535 292 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 GINS1Q14691 196 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 C11orf91Q3C1V1 193 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 CD276Q5ZPR3 534 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 WDR82Q6UXN9 313 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 BRD3OSQ6XYD6 125 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 ZNF454Q8N9F8 522 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 CSNK2A3Q8NEV1 391 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 OR1M1Q8NGA1 313 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 SGMS2Q8NHU3 365 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 OTULINQ96BN8 352 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 ITPKCQ96DU7 683 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 TBX15Q96SF7 602 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 SIRPDQ9H106 197 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 OR10A2Q9H208 303 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 OR51V1Q9H2C8 321 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 PPP1R3EQ9H7J1 279 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 KLHDC2Q9Y2U9 406 aa13.51□□□□□ -0.25
COL9A3-208ENST00000469802 hCG_1807616A0A1W2PRN6 198 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 TCRBV3S1A0A5B6 114 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 GYPAP02724 150 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 LYNP07948 512 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 POU1F1P28069 291 aa13.5□□□□□ -0.25
COL9A3-208ENST00000469802 PSMA6P60900 246 aaKnown RBP13.5□□□□□ -0.25
COL9A3-208ENST00000469802 CSNK2BP67870 215 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms