RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SIGLEC7Q9Y286 467 aa6.09□□□□□ -1.43
USP54-208ENST00000461520 FAM32AQ9Y421 112 aaKnown RBP6.09□□□□□ -1.43
USP54-208ENST00000461520 OR6C6A6NF89 314 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 IFNL4K9M1U5 179 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 PSMD9O00233 223 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 SLC16A7O60669 478 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 TXNDC12O95881 172 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 H1F0P07305 194 aaKnown RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 SBK2P0C263 348 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 ADRA2CP18825 462 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 CPT2P23786 658 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 CRABP1P29762 137 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 MDH1P40925 334 aaKnown RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 OMPP47874 163 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 RGS6P49758 472 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 NUDT2P50583 147 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 RPS6KA3P51812 740 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 LCN2P80188 198 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 KRR1Q13601 381 aaKnown RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 CCDC92Q53HC0 331 aaPredicted RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 SPRNQ5BIV9 151 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 GLYATQ6IB77 296 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 SLC27A4Q6P1M0 643 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 DPY19L2P2Q6ZN68 376 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 Q6ZR03 302 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 LRRC28Q86X40 367 aaPredicted RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 BPIFB2Q8N4F0 458 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 OR2Z1Q8NG97 314 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 OR5L1Q8NGL2 311 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 OR1F12Q8NHA8 337 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 POP5Q969H6 163 aaKnown RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 RASD2Q96D21 266 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 CMBLQ96DG6 245 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 CMTM5Q96DZ9 223 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 ZMYND19Q96E35 227 aaPredicted RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 KCTD14Q9BQ13 255 aaPredicted RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 NUAK2Q9H093 628 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 PATZ1Q9HBE1 687 aaKnown RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 DCAF13Q9NV06 445 aaKnown RBP6.08□□□□□ -1.44
USP54-208ENST00000461520 NDUFAF4Q9P032 175 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 OPN4Q9UHM6 478 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 AURKCQ9UQB9 309 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 PPP1R3CQ9UQK1 317 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 STARD10Q9Y365 291 aa6.08□□□□□ -1.44
USP54-208ENST00000461520 A8MXK9 166 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 F5H0A9 414 aaPredicted RBP6.07□□□□□ -1.44
USP54-208ENST00000461520 SOCS2O14508 198 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 IMPA2O14732 288 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 RER1O15258 196 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 GMNNO75496 209 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 NCK1P16333 377 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 CDKN2AP42771 156 aaKnown RBP6.07□□□□□ -1.44
USP54-208ENST00000461520 FXYD6P3P58550 94 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 PSME3P61289 254 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 BTG1P62324 171 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 HIST1H3AP68431 136 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 KRT72Q14CN4 511 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 ZMYND11Q15326 602 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 AWAT1Q58HT5 328 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 FGD3Q5JSP0 725 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 HIST2H3PS2Q5TEC6 136 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 PXDC1Q5TGL8 231 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 C1orf94Q6P1W5 598 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 DNM1P34Q6PK57 102 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 SMARCD3Q6STE5 483 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 FBXW12Q6X9E4 464 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 PTCHD4Q6ZW05 846 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 HIST2H3AQ71DI3 136 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 ZNF771Q7L3S4 317 aaPredicted RBP6.07□□□□□ -1.44
USP54-208ENST00000461520 MUC20Q8N307 709 aaPredicted RBP6.07□□□□□ -1.44
USP54-208ENST00000461520 ZDHHC22Q8N966 263 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 DEFB108BQ8NET1 73 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 GJC3Q8NFK1 279 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 OR8G5Q8NG78 346 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 OR13G1Q8NGZ3 307 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 PRSS3P2Q8NHM4 247 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 ITLN1Q8WWA0 313 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 SLC7A6Q92536 515 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 APOBEC3DQ96AK3 386 aaPredicted RBP6.07□□□□□ -1.44
USP54-208ENST00000461520 RSRC1Q96IZ7 334 aaKnown RBP6.07□□□□□ -1.44
USP54-208ENST00000461520 C7orf34Q96L11 122 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 OR2V2Q96R30 315 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 SIGLEC11Q96RL6 698 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 SLC6A7Q99884 636 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 HDHD2Q9H0R4 259 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 RERGLQ9H628 205 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 GORASP2Q9H8Y8 452 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 SPAG4Q9NPE6 437 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 MED4Q9NPJ6 270 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 DDX28Q9NUL7 540 aaKnown RBP6.07□□□□□ -1.44
USP54-208ENST00000461520 ZNF446Q9NWS9 450 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 DCAF16Q9NXF7 216 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 IL20RAQ9UHF4 553 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 POLR1DQ9Y2S0 133 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 IER3IP1Q9Y5U9 82 aa6.07□□□□□ -1.44
USP54-208ENST00000461520 TRBV4-1A0A0J9YWV2 114 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 TRAPPC2LH3BP13 241 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 TMEM178BH3BS89 294 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 ARPC3O15145 178 aa6.06□□□□□ -1.44
USP54-208ENST00000461520 FSTL3O95633 263 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms