RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 BBS1Q8NFJ9 593 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 FAM216AQ8WUB2 273 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 RAB40AQ8WXH6 277 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 SGK3Q96BR1 496 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 REEP6Q96HR9 211 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 RGCCQ9H4X1 137 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 TRIM36Q9NQ86 728 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 PAPOLBQ9NRJ5 636 aaKnown RBP10.05□□□□□ -0.8
USP40-210ENST00000454354 C14orf119Q9NWQ9 140 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 ZNF319Q9P2F9 582 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 CLN8Q9UBY8 286 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 NUP50Q9UKX7 468 aa10.05□□□□□ -0.8
USP40-210ENST00000454354 ANKRD30BLA7E2S9 258 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 TRIM77I1YAP6 450 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 LGALS8O00214 317 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 TIPRLO75663 272 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 RGS9O75916 674 aaPredicted RBP10.04□□□□□ -0.8
USP40-210ENST00000454354 H2BFMP0C1H6 154 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 FPR2P25090 351 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 CD80P33681 288 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 COMPP49747 757 aaPredicted RBP10.04□□□□□ -0.8
USP40-210ENST00000454354 NPY4RP50391 375 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 CRISP1P54107 249 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 PSMA6P60900 246 aaKnown RBP10.04□□□□□ -0.8
USP40-210ENST00000454354 ESRRGP62508 458 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 KCNJ8Q15842 424 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 WDR25Q64LD2 544 aaPredicted RBP10.04□□□□□ -0.8
USP40-210ENST00000454354 LYPD2Q6UXB3 125 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 FAM57BQ71RH2 274 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 GCSAMQ8N6F7 178 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 CSNK2A3Q8NEV1 391 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 OR5K1Q8NHB7 308 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 TEX12Q9BXU0 123 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 OR10A2Q9H208 303 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 NIPAL2Q9H841 368 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 ESM1Q9NQ30 184 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 DNAJC27Q9NZQ0 273 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 KIF17Q9P2E2 1029 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 KLHDC2Q9Y2U9 406 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 N6AMT1Q9Y5N5 214 aa10.04□□□□□ -0.8
USP40-210ENST00000454354 KIR2DS1A0A191URI9 304 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 OOEPA6NGQ2 149 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 TNFRSF13BO14836 293 aaPredicted RBP10.03□□□□□ -0.8
USP40-210ENST00000454354 ATP5HO75947 161 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 LHBP01229 141 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 ALOX5APP20292 161 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 NAA10P41227 235 aaPredicted RBP10.03□□□□□ -0.8
USP40-210ENST00000454354 GSK3AP49840 483 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 RASSF2P50749 326 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 DAPP51397 102 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 HOXA4Q00056 320 aaPredicted RBP10.03□□□□□ -0.8
USP40-210ENST00000454354 ATP6AP1Q15904 470 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 SNCBQ16143 134 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 TMEM236Q5W0B7 351 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 BTNL3Q6UXE8 466 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 C9orf139Q6ZV77 190 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 DOK3Q7L591 496 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 WDR86Q86TI4 376 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 ZDHHC22Q8N966 263 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 C19orf18Q8NEA5 215 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 THEM6Q8WUY1 208 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 UPRTQ96BW1 309 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 DUS3LQ96G46 650 aaKnown RBP10.03□□□□□ -0.8
USP40-210ENST00000454354 PGAM5Q96HS1 289 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 YIPF3Q9GZM5 350 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 GABARAPL1Q9H0R8 117 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 TLNRD1Q9H1K6 362 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 MMADHCQ9H3L0 296 aaPredicted RBP10.03□□□□□ -0.8
USP40-210ENST00000454354 C1orf123Q9NWV4 160 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 CTSZQ9UBR2 303 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 ZNF69Q9UC07 566 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 ZNF391Q9UJN7 358 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 LRP12Q9Y561 859 aa10.03□□□□□ -0.8
USP40-210ENST00000454354 TRAV38-1A0A0B4J264 116 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 TMEM89A2RUT3 159 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 CCDC182A6NF36 153 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 C22orf46C9J442 243 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 C3orf80F5H4A9 247 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 NDUFA2O43678 99 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 PLATP00750 562 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 RPS7P62081 194 aaKnown RBP10.02□□□□□ -0.81
USP40-210ENST00000454354 APOFQ13790 326 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 PTGES3Q15185 160 aaKnown RBP10.02□□□□□ -0.81
USP40-210ENST00000454354 SNAPC1Q16533 368 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 LCN1P1Q5VSP4 162 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 TEX36Q5VZQ5 186 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 DEGS2Q6QHC5 323 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 ZNF826PQ6ZT77 177 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 KRT74Q7RTS7 529 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 FAM90A1Q86YD7 464 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.02□□□□□ -0.81
USP40-210ENST00000454354 C11orf53Q8IXP5 236 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 FTMTQ8N4E7 242 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 OR1M1Q8NGA1 313 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 OR8S1Q8NH09 359 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 C22orf15Q8WYQ4 148 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 ITPKCQ96DU7 683 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 TEAD3Q99594 435 aa10.02□□□□□ -0.81
USP40-210ENST00000454354 NUDT16L1Q9BRJ7 211 aaKnown RBP10.02□□□□□ -0.81
USP40-210ENST00000454354 PRRG3Q9BZD7 231 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms