RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 C14orf119Q9NWQ9 140 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF319Q9P2F9 582 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 ARHGAP32A7KAX9 2087 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 PPIAL4EA0A075B759 164 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 PPIAL4DF5H284 164 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 PSMD9O00233 223 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 PHYHO14832 338 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 FAM20BO75063 409 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF254O75437 659 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF205O95201 554 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 PPIAL4FP0DN26 164 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 GATA3P23771 443 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 POLR2IP36954 125 aaKnown RBP12.76□□□□□ -0.37
LIMS3-201ENST00000437679 GNALP38405 381 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 PMELP40967 661 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 LCN2P80188 198 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 MPPED2Q15777 294 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 DCAF12L2Q5VW00 463 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 SLC35F2Q8IXU6 374 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 TMEM165Q9HC07 324 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 RNF7Q9UBF6 113 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF391Q9UJN7 358 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 IKZF2Q9UKS7 526 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 PPIAL4AQ9Y536 164 aa12.76□□□□□ -0.37
LIMS3-201ENST00000437679 ACOD1A6NK06 481 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 A6NLC8 198 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 CEACAM18A8MTB9 384 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 COL6A5A8TX70 2615 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 J3QLI3 93 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 FSTL3O95633 263 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 PTBP3O95758 552 aaKnown RBP12.75□□□□□ -0.37
LIMS3-201ENST00000437679 ALPLP05186 524 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 GRPP07492 148 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 RPS2P15880 293 aaKnown RBP12.75□□□□□ -0.37
LIMS3-201ENST00000437679 CPT2P23786 658 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 DCTDP32321 178 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 RIDAP52758 137 aaKnown RBP12.75□□□□□ -0.37
LIMS3-201ENST00000437679 CDC42P60953 191 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 ROM1Q03395 351 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF829Q3KNS6 432 aaPredicted RBP12.75□□□□□ -0.37
LIMS3-201ENST00000437679 ESCO2Q56NI9 601 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 DOCK11Q5JSL3 2073 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF679Q8IYX0 411 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 OR8B12Q8NGG6 310 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 OR8J1Q8NGP2 316 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 OR8B4Q96RC9 309 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 ADGRL4Q9HBW9 690 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 HAO2Q9NYQ3 351 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 USE1Q9NZ43 259 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 MIOXQ9UGB7 285 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 WARS2Q9UGM6 360 aaKnown RBP12.75□□□□□ -0.37
LIMS3-201ENST00000437679 COPS3Q9UNS2 423 aa12.75□□□□□ -0.37
LIMS3-201ENST00000437679 TMEM269A0A1B0GVZ9 245 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF670-ZNF695F2Z2N8 137 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 F5H0A9 414 aaPredicted RBP12.74□□□□□ -0.37
LIMS3-201ENST00000437679 EI24O14681 340 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 ZFP36P26651 326 aaKnown RBP12.74□□□□□ -0.37
LIMS3-201ENST00000437679 SCGB2A2Q13296 93 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 OR8B8Q15620 311 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF404Q494X3 552 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 FAM201AQ5SY85 155 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 ZNF322Q6U7Q0 402 aaPredicted RBP12.74□□□□□ -0.37
LIMS3-201ENST00000437679 OR51G2Q8NGK0 314 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 MICU1Q9BPX6 476 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 TMEM246Q9BRR3 403 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 PAPOLGQ9BWT3 736 aaKnown RBP12.74□□□□□ -0.37
LIMS3-201ENST00000437679 TTTY10Q9BZA0 68 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 S100A14Q9HCY8 104 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 ABCB9Q9NP78 766 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 C1orf123Q9NWV4 160 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 CLN6Q9NWW5 311 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 FAM206AQ9NX38 181 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 IMPAD1Q9NX62 359 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 METRNQ9UJH8 293 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 LRCH1Q9Y2L9 728 aa12.74□□□□□ -0.37
LIMS3-201ENST00000437679 CUBNO60494 3623 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 MXRA5Q9NR99 2828 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 PPIAL4CA0A0B4J2A2 164 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 hCG_1807616A0A1W2PRN6 198 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 ANXA2P2A6NMY6 339 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 PHF1O43189 567 aaPredicted RBP12.73□□□□□ -0.37
LIMS3-201ENST00000437679 WNT2P09544 360 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 HTR1FP30939 366 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 ALDH3A2P51648 485 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 CXCR4P61073 352 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 SEC61A1P61619 476 aaKnown RBP12.73□□□□□ -0.37
LIMS3-201ENST00000437679 IL5RAQ01344 420 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 POU4F2Q12837 409 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 KCNJ8Q15842 424 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 NLRC3Q7RTR2 1065 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 COMMD2Q86X83 199 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 CBR4Q8N4T8 237 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 BOLLQ8N9W6 283 aaKnown RBP12.73□□□□□ -0.37
LIMS3-201ENST00000437679 DEFB108BQ8NET1 73 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 OR8B3Q8NGG8 313 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 FAM81AQ8TBF8 368 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 TRUB1Q8WWH5 349 aaKnown RBP12.73□□□□□ -0.37
LIMS3-201ENST00000437679 RFKQ969G6 155 aa12.73□□□□□ -0.37
LIMS3-201ENST00000437679 NEIL1Q96FI4 390 aaPredicted RBP12.73□□□□□ -0.37
LIMS3-201ENST00000437679 LYZL4Q96KX0 146 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms