RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 HPXP02790 462 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 CCDC159P0C7I6 412 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 SELEP16581 610 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 CRHBPP24387 322 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 PSMB10P40306 273 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 MAGEB1P43366 347 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 GSK3AP49840 483 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 ZNF81P51508 661 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 IRF3Q14653 427 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 NKPD1Q17RQ9 610 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 WDR38Q5JTN6 314 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 RNLSQ5VYX0 342 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 MRPL21Q7Z2W9 205 aaKnown RBP10.55□□□□□ -0.72
USP40-205ENST00000430158 OR5AS1Q8N127 324 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 OR56B2PQ8NGI1 322 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 OR2G2Q8NGZ5 317 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 RPS4Y2Q8TD47 263 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 NEU4Q8WWR8 484 aaPredicted RBP10.55□□□□□ -0.72
USP40-205ENST00000430158 TRMT61AQ96FX7 289 aaKnown RBP10.55□□□□□ -0.72
USP40-205ENST00000430158 TMEM80Q96HE8 168 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 C4orf36Q96KX1 117 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 VRK1Q99986 396 aaPredicted RBP10.55□□□□□ -0.72
USP40-205ENST00000430158 KRTAP4-6Q9BYQ5 205 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 RAB1BQ9H0U4 201 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 TPK1Q9H3S4 243 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 OPA3Q9H6K4 179 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 MOB1AQ9H8S9 216 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 DYNLRB1Q9NP97 96 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 CYSLTR2Q9NS75 346 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 GPR160Q9UJ42 338 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 ZNF391Q9UJN7 358 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 GNG8Q9UK08 70 aa10.55□□□□□ -0.72
USP40-205ENST00000430158 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.55□□□□□ -0.729e-8■■■■■ 29.1
USP40-205ENST00000430158 LOC390937A0A1W2PQ73 354 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 OR4C45A6NMZ5 311 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 H0YL77 283 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 J3QLW9 94 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 LALBAP00709 142 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 CDK1P06493 297 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 HTR1AP08908 422 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 TACSTD2P09758 323 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 ZNF19P17023 458 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 DDOSTP39656 456 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 CCR9P51686 369 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 ACTA2P62736 377 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 ACTG2P63267 376 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 TIGD6Q17RP2 521 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 OR2G6Q5TZ20 316 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 XAF1Q6GPH4 301 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 SPNS3Q6ZMD2 512 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 AHSA2Q719I0 299 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 WFDC11Q8NEX6 87 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 OR51E1Q8TCB6 317 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 ITFG2Q969R8 447 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 CNBD2Q96M20 576 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 CDCA4Q9BXL8 241 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 PPP1R3EQ9H7J1 279 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 GPR84Q9NQS5 396 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 MRPL15Q9P015 296 aaKnown RBP10.54□□□□□ -0.72
USP40-205ENST00000430158 FRRS1LQ9P0K9 344 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 ZDHHC8Q9ULC8 765 aa10.54□□□□□ -0.72
USP40-205ENST00000430158 CAB39Q9Y376 341 aaPredicted RBP10.54□□□□□ -0.72
USP40-205ENST00000430158 EXOSC1Q9Y3B2 195 aaKnown RBP10.54□□□□□ -0.72
USP40-205ENST00000430158 SIRT4Q9Y6E7 314 aaPredicted RBP10.54□□□□□ -0.72
USP40-205ENST00000430158 A0A096LNT2 108 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 SPRY3O43610 288 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 RP2O75695 350 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 PTBP3O95758 552 aaKnown RBP10.53□□□□□ -0.72
USP40-205ENST00000430158 CFL1P23528 166 aaKnown RBP10.53□□□□□ -0.72
USP40-205ENST00000430158 COL8A2P25067 703 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 TGM4P49221 684 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 MRPS11P82912 194 aaKnown RBP10.53□□□□□ -0.72
USP40-205ENST00000430158 PCGF3Q3KNV8 242 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 FAM209AQ5JX71 171 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 Q5PR19 223 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 BCL2L15Q5TBC7 163 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 SHEQ5VZ18 495 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 BRICD5Q6PL45 260 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 TGIF2LYQ8IUE0 185 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 ZNF786Q8N393 782 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 ZNF540Q8NDQ6 660 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 BHLHE23Q8NDY6 225 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 OR13G1Q8NGZ3 307 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 OR52N1Q8NH53 320 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 SPRYD4Q8WW59 207 aaPredicted RBP10.53□□□□□ -0.72
USP40-205ENST00000430158 YIPF5Q969M3 257 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 FGF23Q9GZV9 251 aaPredicted RBP10.53□□□□□ -0.72
USP40-205ENST00000430158 BARX1Q9HBU1 254 aaPredicted RBP10.53□□□□□ -0.72
USP40-205ENST00000430158 TMEM100Q9NV29 134 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 ERVK-18Q9QC07 812 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 RHBDD3Q9Y3P4 386 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 LRRC42Q9Y546 428 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 V9GYS6 101 aa10.53□□□□□ -0.72
USP40-205ENST00000430158 PLSCR5A0PG75 271 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 TRIM64A6NGJ6 449 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 GGT3PA6NGU5 568 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 VWC2LB2RUY7 222 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 PTGES3LE9PB15 166 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 LYNX1G3V0Z9 82 aa10.52□□□□□ -0.73
USP40-205ENST00000430158 P2RY10O00398 339 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms