RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TSC22D2O75157 780 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 NPIPB7O75200 414 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 OR5F1O95221 314 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 ZNF682O95780 498 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 SNRNP70P08621 437 aaKnown RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 ADORA3P0DMS8 318 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 IGHV1-2P23083 117 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 HTR2AP28223 471 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 RBM34P42696 430 aaKnown RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 CLDN17P56750 224 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 SELENOWP63302 87 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 PUDPQ08623 228 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 MZT1Q08AG7 82 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 DEFB113Q30KQ7 82 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 ZNF585BQ52M93 769 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 CYBRD1Q53TN4 286 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 KRT80Q6KB66 452 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 UGT2A3Q6UWM9 527 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 SPNS3Q6ZMD2 512 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 NANOGNBQ7Z5D8 188 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 CALHM3Q86XJ0 350 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 FAM219AQ8IW50 185 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 C10orf111Q8N326 155 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 OR6T1Q8NGN1 323 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 OR6N1Q8NGY5 312 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 OR5J2Q8NH18 312 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 TMEM255BQ8WV15 326 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 GEMIN6Q8WXD5 167 aaKnown RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 TAMM41Q96BW9 452 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 SLC41A3Q96GZ6 507 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 MED30Q96HR3 178 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 NSMCE2Q96MF7 247 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 ZNF583Q96ND8 569 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 LINC00470Q9BZP3 86 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 ZNF696Q9H7X3 374 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 PLEKHF2Q9H8W4 249 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 MRPL39Q9NYK5 338 aaKnown RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 SLC7A7Q9UM01 511 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 SAMD4AQ9UPU9 718 aaKnown RBP5.42□□□□□ -1.54
USP40-202ENST00000409945 AURKCQ9UQB9 309 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 MED31Q9Y3C7 131 aa5.42□□□□□ -1.54
USP40-202ENST00000409945 POLQO75417 2590 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 LOC102725191A0A1B0GVB3 256 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 SMIM31A0A1B0GVY4 71 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 A0A1W2PRG6 482 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 DEFB108AA8MXU0 73 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 FTCDNL1E5RQL4 147 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 CXCR6O00574 342 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 RNF13O43567 381 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 GUCA1AP43080 201 aaPredicted RBP5.41□□□□□ -1.54
USP40-202ENST00000409945 POU3F1Q03052 451 aaPredicted RBP5.41□□□□□ -1.54
USP40-202ENST00000409945 ZNF273Q14593 569 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 IFI44LQ53G44 452 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 LBHQ53QV2 105 aaPredicted RBP5.41□□□□□ -1.54
USP40-202ENST00000409945 NCMAPQ5T1S8 102 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 TSPO2Q5TGU0 170 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 SHEQ5VZ18 495 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 LRRC75A-AS1Q8N1F1 130 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 OR52N5Q8NH56 324 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 CNBD2Q96M20 576 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 MUS81Q96NY9 551 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 CIB1Q99828 191 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 GORASP2Q9H8Y8 452 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 SLC7A10Q9NS82 523 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 DNAJB9Q9UBS3 223 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 ZNF229Q9UJW7 825 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 POFUT2Q9Y2G5 429 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 ABCA4P78363 2273 aa5.41□□□□□ -1.54
USP40-202ENST00000409945 PRAC2D3DTV9 90 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 M0R1B8 84 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 FARS2O95363 451 aaKnown RBP5.4□□□□□ -1.54
USP40-202ENST00000409945 IGF2P01344 180 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 OR2T7P0C7T2 308 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 DAP3P51398 398 aaKnown RBP5.4□□□□□ -1.54
USP40-202ENST00000409945 CDH11P55287 796 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 RPL24P83731 157 aaKnown RBP5.4□□□□□ -1.54
USP40-202ENST00000409945 BSPH1Q075Z2 132 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 GAGE2BQ13066 116 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 TSC22D1Q15714 1073 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 ATP6AP1Q15904 470 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 GABRA6Q16445 453 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 GAGE2EQ4V326 116 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 PHLDA2Q53GA4 152 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 C6orf52Q5T4I8 152 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 C9orf135Q5VTT2 229 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 AGAP6Q5VW22 663 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 GLYATQ6IB77 296 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 GAGE2AQ6NT46 116 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 PIWIL3Q7Z3Z3 882 aaKnown RBP5.4□□□□□ -1.54
USP40-202ENST00000409945 ZNF611Q8N823 705 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 TMEM239Q8WW34 195 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 PTP4A1Q93096 173 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 SGTBQ96EQ0 304 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 LRR1Q96L50 414 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 PRRC1Q96M27 445 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 ZNF385AQ96PM9 386 aaKnown RBP5.4□□□□□ -1.54
USP40-202ENST00000409945 MRPS26Q9BYN8 205 aaKnown RBP5.4□□□□□ -1.54
USP40-202ENST00000409945 ANKRD60Q9BZ19 345 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 GAGE2DQ9UEU5 116 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 FBXL3Q9UKT7 428 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms