RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 C15orf40Q8WUR7 153 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 VRK1Q99986 396 aaPredicted RBP11.82□□□□□ -0.52
VPS54-203ENST00000409558 MRI1Q9BV20 369 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 SHPKQ9UHJ6 478 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 LY6G6EA0A0G2JKS1 128 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 A0A1B0GTQ1 180 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 RFPL3SP0C7P2 107 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 RBPMSQ93062 196 aaKnown RBP11.82□□□□□ -0.52
VPS54-203ENST00000409558 U3KQA8 63 aa11.82□□□□□ -0.52
VPS54-203ENST00000409558 TPRP12270 2363 aaKnown RBP11.81□□□□□ -0.52
VPS54-203ENST00000409558 CCDC163A0A0D9SF12 145 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 THEM4Q5T1C6 240 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 LINC00696Q6ZRV3 163 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 C5orf24Q7Z6I8 188 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 MISPQ8IVT2 679 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 AGBL5Q8NDL9 886 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 NUBPLQ8TB37 319 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 SMIM3Q9BZL3 60 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 WDR13Q9H1Z4 485 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 AGPAT2O15120 278 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 RAG2P55895 527 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 SPINK14Q6IE38 97 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 STPG2Q8N412 459 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 ESX1Q8N693 406 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 CRLF2Q9HC73 371 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 EHFQ9NZC4 300 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 MBD2Q9UBB5 411 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 RAB22AQ9UL26 194 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 HS3ST3B1Q9Y662 390 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 RAD51DO75771 328 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 CSRP1P21291 193 aaKnown RBP11.81□□□□□ -0.52
VPS54-203ENST00000409558 GLRA1P23415 457 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 TMEM105Q8N8V8 129 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 ZNF845Q96IR2 970 aaPredicted RBP11.81□□□□□ -0.52
VPS54-203ENST00000409558 PFDN2Q9UHV9 154 aa11.81□□□□□ -0.52
VPS54-203ENST00000409558 A0A0J9YW62 118 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 SCRN3Q0VDG4 424 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 C3AR1Q16581 482 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 PLAC9Q5JTB6 97 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 ZNF774Q6NX45 483 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 OR10R2Q8NGX6 335 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 DCUN1D4Q92564 292 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 TMEM231Q9H6L2 316 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 CHCHD2Q9Y6H1 151 aaPredicted RBP11.8□□□□□ -0.52
VPS54-203ENST00000409558 A0A0A6YYD4 124 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 C10orf142B7Z368 130 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 SERPINF1P36955 418 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 MICBQ29980 383 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 TUSC1Q2TAM9 212 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 SNAI3Q3KNW1 292 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 CPNE2Q96FN4 548 aaPredicted RBP11.8□□□□□ -0.52
VPS54-203ENST00000409558 HES7Q9BYE0 225 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 PLA2G3Q9NZ20 509 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 ZFHX2Q9C0A1 2572 aaPredicted RBP11.8□□□□□ -0.52
VPS54-203ENST00000409558 UMODP07911 640 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 MMP16P51512 607 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 SSR4P51571 173 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 KIAA2026Q5HYC2 2103 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 ANGPTL6Q8NI99 470 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 C17orf50Q8WW18 174 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 PNPLA2Q96AD5 504 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 TAS2R3Q9NYW6 316 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 PCDHGA1Q9Y5H4 931 aa11.8□□□□□ -0.52
VPS54-203ENST00000409558 A0A1B0GTI1 187 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 KANTRA0A1W2PQU2 76 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 MED19A0JLT2 244 aaPredicted RBP11.79□□□□□ -0.52
VPS54-203ENST00000409558 FAM166BA8MTA8 275 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 NAGAP17050 411 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 IGFBP3P17936 291 aaPredicted RBP11.79□□□□□ -0.52
VPS54-203ENST00000409558 IGFBP7Q16270 282 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 SP6Q3SY56 376 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 KMT5CQ86Y97 462 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 CMTM3Q96MX0 182 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 OXGR1Q96P68 337 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 GPHA2Q96T91 129 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 SNRPGP15A8MWD9 76 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 MTCP1P56278 107 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 KISS1Q15726 138 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 ZNF260Q3ZCT1 412 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 GPR160Q9UJ42 338 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 GDF1P27539 372 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 PCOLCEQ15113 449 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 LY6G6FQ5SQ64 297 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 SPERTQ8NA61 448 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 THAP6Q8TBB0 222 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 ELP5Q8TE02 316 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 ABHD3Q8WU67 409 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 TTC9Q92623 222 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 MFRPQ9BY79 579 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 SRXN1Q9BYN0 137 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 ASF1BQ9NVP2 202 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 PARPBPQ9NWS1 579 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 IGKV1-9A0A0C4DH69 117 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 IL5P05113 134 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 C4BPBP20851 252 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 NUP62P37198 522 aaPredicted RBP11.79□□□□□ -0.52
VPS54-203ENST00000409558 RGS19P49795 217 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 TSPO2Q5TGU0 170 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 SLC23A3Q6PIS1 610 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 ZBTB44Q8NCP5 570 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms