RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 HTR5AP47898 357 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 TAS2R20P59543 309 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 GSG1Q2KHT4 349 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 FAM57BQ71RH2 274 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 PRSS45Q7RTY3 260 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 CCDC36Q8IYA8 594 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 OR51A4Q8NGJ6 313 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 OR10AC1Q8NH08 325 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 MED30Q96HR3 178 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 BEX2Q9BXY8 128 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 FREM2Q5SZK8 3169 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 COX5BP10606 129 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 ANXA3P12429 323 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 ZNF20P17024 532 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 MAGEB1P43366 347 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 PER3P56645 1201 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 NKAIN3Q8N8D7 197 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 OR8B12Q8NGG6 310 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 AUNIPQ9H7T9 357 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 CEP295Q9C0D2 2601 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 A0A0A6YYH2 397 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 LOC100289279A0A1B0GTE1 492 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 A6NJ64 397 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 MTRF1O75570 445 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 SNAPC5O75971 98 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 MT-ND4P03905 459 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 MAS1P04201 325 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 TPOP07202 933 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 ERCC1P07992 297 aaPredicted RBP15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 CCL1P22362 96 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 CRYGSP22914 178 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 PSG4Q00888 419 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 PLP2Q04941 152 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 FCN2Q15485 313 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 C1orf185Q5T7R7 199 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 FAM166AQ6J272 317 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 ZNF774Q6NX45 483 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 SERPINA12Q8IW75 414 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 IZUMO1Q8IYV9 350 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 CNEP1R1Q8N9A8 125 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 OR5D14Q8NGL3 314 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 PPP1R14AQ96A00 147 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 FOXRED1Q96CU9 486 aaPredicted RBP15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 PRSS50Q9UI38 385 aa15.9■□□□□ 0.14
CCDC88C-203ENST00000389856 NCOA6Q14686 2063 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 ARHGAP21Q5T5U3 1957 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 A0A1B0GUH1 482 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 MBD3L4A6NDZ8 208 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 MBD3L3A6NE82 208 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 MBD3L5A6NJ08 208 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 MMP7P09237 267 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 CSF1P09603 554 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 ABOP16442 354 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 IGFBP3P17936 291 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 CLDN12P56749 244 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 GUSBP1Q15486 140 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 RNASE12Q5GAN4 147 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 METTL11BQ5VVY1 283 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 PGAP1Q75T13 922 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 OR1K1Q8NGR3 316 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 MBD3L2Q8NHZ7 208 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 OR51E1Q8TCB6 317 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 PTX4Q96A99 478 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 WNT5BQ9H1J7 359 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 C20orf85Q9H1P6 137 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 RGCCQ9H4X1 137 aa15.89■□□□□ 0.13
CCDC88C-203ENST00000389856 H7C417 338 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 SULT1C2O00338 296 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 RBBP9O75884 186 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 SULT1A3P0DMM9 295 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 SULT1A4P0DMN0 295 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 HOXB1P14653 301 aaPredicted RBP15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 GNALP38405 381 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 MECP2P51608 486 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 PABPC1L2AQ5JQF8 200 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 TFAP2EQ6VUC0 442 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 Q6ZT83 130 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 C9orf106Q8NAJ2 232 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 OR6M1Q8NGM8 313 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 FAM57AQ8TBR7 257 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 PHF21AQ96BD5 680 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 C10orf35Q96D05 121 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 GPR84Q9NQS5 396 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 ZNF71Q9NQZ8 489 aaPredicted RBP15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 MTFP1Q9UDX5 166 aa15.88■□□□□ 0.13
CCDC88C-203ENST00000389856 MEIKINA0A087WXM9 373 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 GGT3PA6NGU5 568 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 IL5P05113 134 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 SLC2A1P11166 492 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 CCR6P51684 374 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 C9orf135Q5VTT2 229 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 ZNF324BQ6AW86 544 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 ZNF782Q6ZMW2 699 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 GCNT2Q8N0V5 402 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 LILRB4Q8NHJ6 448 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 AKR7LQ8NHP1 331 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 FAM3DQ96BQ1 224 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 LUZP4Q9P127 313 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 PROCRQ9UNN8 238 aa15.87■□□□□ 0.13
CCDC88C-203ENST00000389856 A0A096LPE4 126 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms