RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ANKRD30BLA7E2S9 258 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 PHYHO14832 338 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 PRODHO43272 600 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 COMPP49747 757 aaPredicted RBP18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 KCNJ8Q15842 424 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 FAM57BQ71RH2 274 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 DOK3Q7L591 496 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 CPOQ8IVL8 374 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 SIGLECL1Q8N7X8 197 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 ZNF454Q8N9F8 522 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 OTOSQ8NHW6 89 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 UPRTQ96BW1 309 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 C14orf119Q9NWQ9 140 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 C1orf123Q9NWV4 160 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 DNAJC27Q9NZQ0 273 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 ZNF319Q9P2F9 582 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 ANK2Q01484 3957 aa18.09■□□□□ 0.49
CCDC28B-201ENST00000373602 hCG_38984A0A1B0GV85 526 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 TNFRSF13BO14836 293 aaPredicted RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 SELENOFO60613 162 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 GRPP07492 148 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 LYNP07948 512 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 H2BFMP0C1H6 154 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 CFL1P23528 166 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 UBA52P62987 128 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 KLHL12Q53G59 568 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 SLC35D3Q5M8T2 416 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 SFRP4Q6FHJ7 346 aaPredicted RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 RBMS3Q6XE24 437 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 BCL6BQ8N143 479 aaPredicted RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 BOLLQ8N9W6 283 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 GCDHQ92947 438 aaPredicted RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 NUDT16L1Q9BRJ7 211 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 OR10A2Q9H208 303 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 SLC25A19Q9HC21 320 aa18.08■□□□□ 0.48
CCDC28B-201ENST00000373602 GSC2O15499 205 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 SLC2A5P22732 501 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 NPY4RP50391 375 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 ZNF826PQ6ZT77 177 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 OR8S1Q8NH09 359 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 DNAJC9Q8WXX5 260 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 NRBF2Q96F24 287 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 CADM1Q9BY67 442 aaKnown RBP18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 RGCCQ9H4X1 137 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 TRIM36Q9NQ86 728 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 CTSZQ9UBR2 303 aa18.07■□□□□ 0.48
CCDC28B-201ENST00000373602 TRAV38-1A0A0B4J264 116 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 OOEPA6NGQ2 149 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 A6NLC8 198 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 C3orf80F5H4A9 247 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 NDUFA2O43678 99 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 LHBP01229 141 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 IGHV4-38-2P0DP08 117 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 CFPP27918 469 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 GSK3AP49840 483 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 OR8B8Q15620 311 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 TMEM236Q5W0B7 351 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 C11orf53Q8IXP5 236 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 PARP8Q8N3A8 854 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 GCSAMQ8N6F7 178 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 CSNK2A3Q8NEV1 391 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 BBS1Q8NFJ9 593 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 THEM6Q8WUY1 208 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 PGAM5Q96HS1 289 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 ZNF48Q96MX3 618 aaPredicted RBP18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 TEX12Q9BXU0 123 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 MMADHCQ9H3L0 296 aaPredicted RBP18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 BRD7Q9NPI1 651 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 ERVK-18Q9QC07 812 aa18.06■□□□□ 0.48
CCDC28B-201ENST00000373602 hCG_1807616A0A1W2PRN6 198 aa18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 C22orf46C9J442 243 aa18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 NAA10P41227 235 aaPredicted RBP18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 GFOD2Q3B7J2 385 aa18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 C9orf139Q6ZV77 190 aa18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 WDR86Q86TI4 376 aa18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 UTP4Q969X6 686 aaKnown RBP18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 MS4A7Q9GZW8 240 aaPredicted RBP18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 KLHDC2Q9Y2U9 406 aa18.05■□□□□ 0.48
CCDC28B-201ENST00000373602 IGHV3OR16-10A0A075B7F0 116 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 ADAM20O43506 726 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 ENSAO43768 121 aaKnown RBP18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 PLATP00750 562 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 CRISP1P54107 249 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 RPS7P62081 194 aaKnown RBP18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 BNIP1Q12981 228 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 SNCBQ16143 134 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 SNAPC1Q16533 368 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 TEX36Q5VZQ5 186 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 FAHD1Q6P587 224 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 OR1M1Q8NGA1 313 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 NIPAL2Q9H841 368 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 RNPEPL1Q9HAU8 725 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 PAPOLBQ9NRJ5 636 aaKnown RBP18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 TVP23BQ9NYZ1 205 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 RHBDD3Q9Y3P4 386 aa18.04■□□□□ 0.48
CCDC28B-201ENST00000373602 TIPRLO75663 272 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 EGR1P18146 543 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 ALOX5APP20292 161 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 PRTN3P24158 256 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms