RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 KRR1Q13601 381 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 CBFBQ13951 182 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 MELKQ14680 651 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 LGALSLQ3ZCW2 172 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 ALG10Q5BKT4 473 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 LEG1Q6P5S2 330 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PAMR1Q6UXH9 720 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 MARCH9Q86YJ5 346 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ZNF679Q8IYX0 411 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 GAPTQ8N292 157 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CADM2Q8N3J6 435 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 KBTBD8Q8NFY9 601 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OR1J4Q8NGS1 313 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OR6X1Q8NH79 312 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 LGALS14Q8TCE9 139 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 THEM6Q8WUY1 208 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 NSMAFQ92636 917 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 UFD1Q92890 307 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SPACA9Q96E40 222 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 RNF125Q96EQ8 232 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 Q96MF0 132 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 KCTD7Q96MP8 289 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ZNF385AQ96PM9 386 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 DDA1Q9BW61 102 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ZNF416Q9BWM5 594 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PTGES2Q9H7Z7 377 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TIGARQ9NQ88 270 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SLC2A8Q9NY64 477 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 MED11Q9P086 117 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 KLHL9Q9P2J3 617 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 KLK11Q9UBX7 282 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PRODH2Q9UF12 536 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TMCC3Q9ULS5 477 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PLEKHA6Q9Y2H5 1048 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 POLEQ07864 2286 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PLSCR5A0PG75 271 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CPED1A4D0V7 1026 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PGPEP1LA6NFU8 196 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 A6NIN4 97 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ACOD1A6NK06 481 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 C5orf58C9J3I9 102 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PRR23D1E9PI22 279 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 LOC110117498-PIK3R3F6TDL0 507 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SCRG1O75711 98 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CGAP01215 116 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ALDOBP05062 364 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OCM2P0CE71 109 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OCMP0CE72 109 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 PRR23D2P0DMB1 279 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 OR8G3PP0DMU2 310 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CALCBP10092 127 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SLC6A6P31641 620 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OPRM1P35372 400 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ACVR1BP36896 505 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 APOBEC1P41238 236 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 PSMD4P55036 377 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 TIRAPP58753 221 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 BTG1P62324 171 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 DCDP81605 110 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 MXD1Q05195 221 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 RNPS1Q15287 305 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 UBE2V2Q15819 145 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 LPAL2Q16609 132 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SNAI3Q3KNW1 292 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 UBE2NLQ5JXB2 153 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 RSBN1Q5VWQ0 802 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 LYSMD4Q5XG99 296 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TMEM225Q6GV28 225 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OR7E24Q6IFN5 339 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CASP12Q6UXS9 341 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ELMOD2Q8IZ81 293 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 KDM8Q8N371 416 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 DEFB123Q8N688 67 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 DUSP19Q8WTR2 217 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PIGKQ92643 395 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SEH1LQ96EE3 360 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 DNAJA3Q96EY1 480 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SORCS2Q96PQ0 1159 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TBX5Q99593 518 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 HES7Q9BYE0 225 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TTTY10Q9BZA0 68 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PRRG4Q9BZD6 226 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ULBP3Q9BZM4 244 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CHST6Q9GZX3 395 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ZDHHC11Q9H8X9 412 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 RANGRFQ9HD47 186 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 Q9N2J8 555 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CHST11Q9NPF2 352 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 MED29Q9NX70 200 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 STEAP1Q9UHE8 339 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 LIPGQ9Y5X9 500 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ABCA2Q9BZC7 2435 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 NCOR2Q9Y618 2525 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 MEIKINA0A087WXM9 373 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 IRGMA1A4Y4 181 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 NPIPB5A8MRT5 1133 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 MFNGO00587 321 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 XRCC3O43542 346 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CYTIPO60759 359 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CFDP00746 253 aaPredicted RBP1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms