RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ACTG1P63261 375 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 PLGLB1Q02325 96 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 CARD17Q5XLA6 110 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 ANKRD16Q6P6B7 361 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 DEGS2Q6QHC5 323 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 LRRC69Q6ZNQ3 347 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 SYT9Q86SS6 491 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 C11orf40Q8WZ69 217 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 SLC39A7Q92504 469 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 INTS12Q96CB8 462 aaKnown RBP11.33□□□□□ -0.6
CLK3-201ENST00000345005 PHYHIPLQ96FC7 376 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 GFI1Q99684 422 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 TTTY12Q9BZ98 90 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 CA10Q9NS85 328 aa11.33□□□□□ -0.6
CLK3-201ENST00000345005 PQLC2LA1A4F0 135 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 RFPL4AA6NLU0 287 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 OR4C45A6NMZ5 311 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 MPTX1A8MV57 137 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 PRSS44E7EML9 344 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 RFPL4AL1F8VTS6 287 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 SMAD9O15198 467 aaKnown RBP11.32□□□□□ -0.6
CLK3-201ENST00000345005 ARPC5O15511 151 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 STARP49675 285 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 MEOX1P50221 254 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 CAPZA1P52907 286 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 SUCLG1P53597 346 aaKnown RBP11.32□□□□□ -0.6
CLK3-201ENST00000345005 ARG2P78540 354 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 ZNF169Q14929 603 aaPredicted RBP11.32□□□□□ -0.6
CLK3-201ENST00000345005 KCNMB1Q16558 191 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 HYAL4Q2M3T9 481 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 TMEM255AQ5JRV8 349 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 OTPQ5XKR4 325 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 GALNTL5Q7Z4T8 443 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 DCXRQ7Z4W1 244 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 OR10D3Q8NH80 312 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 GPR148Q8TDV2 347 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 TNFAIP8L1Q8WVP5 186 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 MARC2Q969Z3 335 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 ADGRG7Q96K78 797 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 ZNF552Q9H707 407 aaPredicted RBP11.32□□□□□ -0.6
CLK3-201ENST00000345005 SEC61A2Q9H9S3 476 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 NCOA6Q14686 2063 aaPredicted RBP11.32□□□□□ -0.6
CLK3-201ENST00000345005 DNAJC13O75165 2243 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 CACNA1AO00555 2505 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 TEX46H3BTG2 121 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 CXCL13O43927 109 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 APOC1P02654 83 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 DCTDP32321 178 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 GUCA1AP43080 201 aaPredicted RBP11.32□□□□□ -0.6
CLK3-201ENST00000345005 EIF1AXP47813 144 aaKnown RBP11.32□□□□□ -0.6
CLK3-201ENST00000345005 CSNK1A1P48729 337 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 PCGF3Q3KNV8 242 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 MTFR2Q6P444 385 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 LRFN4Q6PJG9 635 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 UQCC3Q6UW78 93 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 ZNF676Q8N7Q3 588 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 TMEM178AQ8NBL3 297 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 CLRN3Q8NCR9 226 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 PXT1Q8NFP0 134 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 ST7LQ8TDW4 575 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 TMEM54Q969K7 222 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 FBXW5Q969U6 566 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 CPNE4Q96A23 557 aaPredicted RBP11.32□□□□□ -0.6
CLK3-201ENST00000345005 C4orf45Q96LM5 186 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 MFFQ9GZY8 342 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 C1orf198Q9H425 327 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 LRP12Q9Y561 859 aa11.32□□□□□ -0.6
CLK3-201ENST00000345005 ZNF407Q9C0G0 2248 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 TRBV5-7A0A0A0MS05 114 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 A0A0A6YYH2 397 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 GGT3PA6NGU5 568 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 A6NJ64 397 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 ZNF891A8MT65 544 aaPredicted RBP11.31□□□□□ -0.6
CLK3-201ENST00000345005 FAM166BA8MTA8 275 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 PYCARD-AS1I3L0S3 204 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 RLN1P04808 185 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 LPLP06858 475 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 ADRB1P08588 477 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 H2AFB1P0C5Y9 115 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 PRSS3P35030 304 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 RFC3P40938 356 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 ID4P47928 161 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 CCL11P51671 97 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 ZNF133P52736 654 aaPredicted RBP11.31□□□□□ -0.6
CLK3-201ENST00000345005 SRSF6Q13247 344 aaKnown RBP11.31□□□□□ -0.6
CLK3-201ENST00000345005 CLN3Q13286 438 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 ZNF766Q5HY98 468 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 LRRTM1Q86UE6 522 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.31□□□□□ -0.6
CLK3-201ENST00000345005 LINC00346Q8IVM7 164 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 PRSS35Q8N3Z0 413 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 TMEM251Q8N6I4 163 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 ZIC4Q8N9L1 334 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 OR2AJ1Q8NGZ0 328 aa11.31□□□□□ -0.6
CLK3-201ENST00000345005 ZNF385AQ96PM9 386 aaKnown RBP11.31□□□□□ -0.6
CLK3-201ENST00000345005 USB1Q9BQ65 265 aaKnown RBP11.31□□□□□ -0.6
CLK3-201ENST00000345005 FXYD6-FXYD2A0A087WZ82 144 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 H3BUI4 141 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 OR2F2O95006 317 aa11.3□□□□□ -0.6
CLK3-201ENST00000345005 SNAPINO95295 136 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms