RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PTBP3O95758 552 aaKnown RBP16.25■□□□□ 0.19
LIME1-201ENST00000309546 PPIAL4GP0DN37 164 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 ZNF121P58317 390 aaPredicted RBP16.25■□□□□ 0.19
LIME1-201ENST00000309546 FGF12P61328 243 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 FAM3AP98173 230 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 GINS1Q14691 196 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 KLHL12Q53G59 568 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 PLBD1Q6P4A8 553 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 ZNF841Q6ZN19 808 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 SHFQ7M4L6 423 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 AQP12AQ8IXF9 295 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 PLPP7Q8NBV4 271 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 RNF133Q8WVZ7 376 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 SGK3Q96BR1 496 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 C1orf147Q96MC9 270 aaPredicted RBP16.25■□□□□ 0.19
LIME1-201ENST00000309546 SP140LQ9H930 580 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 ZMAT3Q9HA38 289 aaKnown RBP16.25■□□□□ 0.19
LIME1-201ENST00000309546 ZNF556Q9HAH1 456 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 ERVK-18Q9QC07 812 aa16.25■□□□□ 0.19
LIME1-201ENST00000309546 TRAV38-1A0A0B4J264 116 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 PRR23D1E9PI22 279 aaPredicted RBP16.24■□□□□ 0.19
LIME1-201ENST00000309546 SELENOFO60613 162 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 APOC1P02654 83 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 GYPAP02724 150 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 H2BFMP0C1H6 154 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 PRR23D2P0DMB1 279 aaPredicted RBP16.24■□□□□ 0.19
LIME1-201ENST00000309546 DDOSTP39656 456 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 MTNR1AP48039 350 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 NPY4RP50391 375 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 TUSC1Q2TAM9 212 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 SPATA24Q86W54 205 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 HS3ST5Q8IZT8 346 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 PGAM5Q96HS1 289 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 MARCH7Q9H992 704 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 TRIM36Q9NQ86 728 aa16.24■□□□□ 0.19
LIME1-201ENST00000309546 hCG_38984A0A1B0GV85 526 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 MDFIC2A0A1B0GVS7 189 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 GYG2O15488 501 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 PLATP00750 562 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 EGR1P18146 543 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 OPRL1P41146 370 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 NAA10P41227 235 aaPredicted RBP16.23■□□□□ 0.19
LIME1-201ENST00000309546 POU4F2Q12837 409 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 FLOT2Q14254 428 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 BRD3OSQ6XYD6 125 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 TRPM8Q7Z2W7 1104 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.23■□□□□ 0.19
LIME1-201ENST00000309546 TIGD4Q8IY51 512 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 GCSAMQ8N6F7 178 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 OR52H1Q8NGJ2 320 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 THEM6Q8WUY1 208 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 PCGF1Q9BSM1 259 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 PAPOLGQ9BWT3 736 aaKnown RBP16.23■□□□□ 0.19
LIME1-201ENST00000309546 OR10A2Q9H208 303 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 TENM1Q9UKZ4 2725 aa16.23■□□□□ 0.19
LIME1-201ENST00000309546 IGHV3OR15-7A0A075B7D8 119 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 LYNP07948 512 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 HKR1P10072 659 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 OSMP13725 252 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 PRKACGP22612 351 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 CFL1P23528 166 aaKnown RBP16.22■□□□□ 0.19
LIME1-201ENST00000309546 GNALP38405 381 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 RPS7P62081 194 aaKnown RBP16.22■□□□□ 0.19
LIME1-201ENST00000309546 CBX1P83916 185 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 FOXL1Q12952 345 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 DNAL1Q4LDG9 190 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 GPR157Q5UAW9 335 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 C9orf139Q6ZV77 190 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 PRSS45Q7RTY3 260 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 WDR86Q86TI4 376 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 FAM90A1Q86YD7 464 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 OTOSQ8NHW6 89 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 LRRC29Q8WV35 223 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 SLC25A28Q96A46 364 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 RASSF4Q9H2L5 321 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 PPP1R3EQ9H7J1 279 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 SMURF1Q9HCE7 757 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 ZNF319Q9P2F9 582 aa16.22■□□□□ 0.19
LIME1-201ENST00000309546 SFTPBP07988 381 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 RNASE1P07998 156 aaKnown RBP16.21■□□□□ 0.19
LIME1-201ENST00000309546 GSK3AP49840 483 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 CSNK2BP67870 215 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 SLC9A3R2Q15599 337 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 CD276Q5ZPR3 534 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 RUSC1-AS1Q66K80 236 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 CPOQ8IVL8 374 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 OR1M1Q8NGA1 313 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 YY1AP1Q9H869 796 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 KIF17Q9P2E2 1029 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 PCDHGB1Q9Y5G3 927 aa16.21■□□□□ 0.19
LIME1-201ENST00000309546 PRODHO43272 600 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 NDUFA2O43678 99 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 FKBP6O75344 327 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 HMGN1P05114 100 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 HOXB6P17509 224 aaKnown RBP16.2■□□□□ 0.18
LIME1-201ENST00000309546 CFHR2P36980 270 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 TMEM236Q5W0B7 351 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 ZNF454Q8N9F8 522 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 CSNK2A3Q8NEV1 391 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 BBS1Q8NFJ9 593 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms