RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TIGD3Q6B0B8 471 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 CTRB2Q6GPI1 263 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 KIRREL2Q6UWL6 708 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 STAC2Q6ZMT1 411 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 POM121L2Q96KW2 1035 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 B9D1Q9UPM9 204 aa17.25■□□□□ 0.35
UPF1-201ENST00000262803 C1QAP02745 245 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 CD82P27701 267 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 GSG1Q2KHT4 349 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 ETFRF1Q6IPR1 90 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 DRAM2Q6UX65 266 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 CCDC71Q8IV32 467 aaPredicted RBP17.24■□□□□ 0.35
UPF1-201ENST00000262803 OR11G2Q8NGC1 345 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 OR1F12Q8NHA8 337 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 ARHGDIGQ99819 225 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 SLC25A32Q9H2D1 315 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 SLC22A13Q9Y226 551 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 OSGIN2Q9Y236 505 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 GFERP55789 205 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 ENDOGQ14249 297 aaKnown RBP17.24■□□□□ 0.35
UPF1-201ENST00000262803 NHLRC1Q6VVB1 395 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 FAM58AQ8N1B3 248 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 AK3Q9UIJ7 227 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 A4GNTQ9UNA3 340 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 ECM29Q5VYK3 1845 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 RPA2P15927 270 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 PAX6P26367 422 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 C1orf53Q5VUE5 145 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 TMEM230Q96A57 120 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 ZNF251Q9BRH9 671 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 PTDSS2Q9BVG9 487 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 SLC23A1Q9UHI7 598 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 GLI3P10071 1580 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 LIMS3P0CW19 117 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 LIMS4P0CW20 117 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 UBE2MP61081 183 aaKnown RBP17.24■□□□□ 0.35
UPF1-201ENST00000262803 C2orf76Q3KRA6 126 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 FAM27D1Q5T7N8 215 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 SUCNR1Q9BXA5 334 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 KCNE3Q9Y6H6 103 aa17.24■□□□□ 0.35
UPF1-201ENST00000262803 MAGEB1P43366 347 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 RAB1AP62820 205 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 MED30Q96HR3 178 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 TMEM56Q96MV1 263 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 PPP1R3CQ9UQK1 317 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 A0A087WUJ7 227 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 GZMKP49863 264 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 TLE1Q04724 770 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 C12orf73Q69YU5 71 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 OR1J1Q8NGS3 322 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 SPACA5Q96QH8 159 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 MED29Q9NX70 200 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 IGLV3-16A0A075B6K0 115 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 ATP6V1G2-DDX39BF2Z307 99 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 ANGPTL7O43827 346 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 HAAOP46952 286 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 RAB7AP51149 207 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 WNT3P56703 355 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 XAF1Q6GPH4 301 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 RDH5Q92781 318 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 FGF14Q92915 247 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 ESRP2Q9H6T0 727 aaKnown RBP17.23■□□□□ 0.35
UPF1-201ENST00000262803 AUNIPQ9H7T9 357 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 CSAG2Q9Y5P2 127 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 SERTM1A2A2V5 107 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 WDR1O75083 606 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 NXPH3O95157 252 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 METAP1P53582 386 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 GNG3P63215 75 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 HYAL1Q12794 435 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 ANKRD16Q6P6B7 361 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 OR10G3Q8NGC4 313 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 ORAI1Q96D31 301 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 SLIRPQ9GZT3 109 aaKnown RBP17.23■□□□□ 0.35
UPF1-201ENST00000262803 YTHDF2Q9Y5A9 579 aaKnown RBP17.23■□□□□ 0.35
UPF1-201ENST00000262803 BPIFCQ8NFQ6 507 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 GPBAR1Q8TDU6 330 aa17.23■□□□□ 0.35
UPF1-201ENST00000262803 ING1Q9UK53 422 aaPredicted RBP17.23■□□□□ 0.35
UPF1-201ENST00000262803 ZFP92A6NM28 416 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 OR5H8P0DN80 308 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 RPL7L1Q6DKI1 246 aaKnown RBP17.22■□□□□ 0.35
UPF1-201ENST00000262803 TP53I13Q8NBR0 393 aaPredicted RBP17.22■□□□□ 0.35
UPF1-201ENST00000262803 OR4D9Q8NGE8 314 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 C2orf50Q96LR7 162 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 H7BYZ3 331 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 GABRA1P14867 456 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 PSMB6P28072 239 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 EMP3P54852 163 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 H3F3CQ6NXT2 135 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 CCDC190Q86UF4 302 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 BATF2Q8N1L9 274 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 OR5B3Q8NH48 314 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 NEIL1Q96FI4 390 aaPredicted RBP17.22■□□□□ 0.35
UPF1-201ENST00000262803 PPP1R2P9O14990 202 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 EPXP11678 715 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 RAE1P78406 368 aaKnown RBP17.22■□□□□ 0.35
UPF1-201ENST00000262803 OTPQ5XKR4 325 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 DEGS2Q6QHC5 323 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 GLCCI1Q86VQ1 547 aa17.22■□□□□ 0.35
UPF1-201ENST00000262803 NHLRC2Q8NBF2 726 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms