RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MMP28Q9H239 520 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 FAIMQ9NVQ4 179 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 KLK13Q9UKR3 277 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF724A8MTY0 619 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 GABARAPH6UMI1 98 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 IFNA21P01568 189 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 SUCLG1P53597 346 aaKnown RBP10.21□□□□□ -0.78
VPS4A-201ENST00000254950 PLAURQ03405 335 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 IKZF1Q13422 519 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 LSRQ86X29 649 aaPredicted RBP10.21□□□□□ -0.78
VPS4A-201ENST00000254950 WNT2BQ93097 391 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 TECTBQ96PL2 329 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 PRRT1Q99946 306 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 BCO1Q9HAY6 547 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 CYSLTR2Q9NS75 346 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 KCNIP3Q9Y2W7 256 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 PRUNE2Q8WUY3 3088 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 MCRIP1C9JLW8 97 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 WRBO00258 174 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 CREBL2O60519 120 aaPredicted RBP10.21□□□□□ -0.78
VPS4A-201ENST00000254950 RBMXL2O75526 392 aaKnown RBP10.21□□□□□ -0.78
VPS4A-201ENST00000254950 MT-ND4P03905 459 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 RBMXP38159 391 aaKnown RBP10.21□□□□□ -0.78
VPS4A-201ENST00000254950 FABP6P51161 128 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 C19orf57Q0VDD7 668 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 TBRG1Q3YBR2 411 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 CFAP77Q6ZQR2 320 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 PRSS45Q7RTY3 260 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 OR10AC1Q8NH08 325 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 OR51F2Q8NH61 342 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 WDFY2Q96P53 400 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 NDRG3Q9UGV2 375 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 MEMO1Q9Y316 297 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 KCNMB2Q9Y691 235 aa10.21□□□□□ -0.78
VPS4A-201ENST00000254950 NXPH2O95156 264 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 ANXA3P12429 323 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 OPRM1P35372 400 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 H3F3CQ6NXT2 135 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 EFNA2O43921 213 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 SLC34A2O95436 690 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 GRPP07492 148 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 FUT6P51993 359 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 ZNF133P52736 654 aaPredicted RBP10.2□□□□□ -0.78
VPS4A-201ENST00000254950 RTP5Q14D33 572 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 NUFIP2Q7Z417 695 aaKnown RBP10.2□□□□□ -0.78
VPS4A-201ENST00000254950 ZNF573Q86YE8 665 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 OR56B2PQ8NGI1 322 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 OR5H6Q8NGV6 325 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 OR10K1Q8NGX5 313 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 UQCC2Q9BRT2 126 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 DNTTIP1Q9H147 329 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 METTL8Q9H825 291 aaKnown RBP10.2□□□□□ -0.78
VPS4A-201ENST00000254950 POLDIP2Q9Y2S7 368 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 ZNF708P17019 499 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 DMRTC1Q5HYR2 192 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 SPATA46Q5T0L3 261 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 C1orf185Q5T7R7 199 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 BPIFB2Q8N4F0 458 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 OR11L1Q8NGX0 322 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 FAM122AQ96E09 287 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 CMTM3Q96MX0 182 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 SCPEP1Q9HB40 452 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 ETAA1Q9NY74 926 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 PLEKHB1Q9UF11 243 aaPredicted RBP10.2□□□□□ -0.78
VPS4A-201ENST00000254950 OR14J1Q9UGF5 321 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 PCDH15Q96QU1 1955 aa10.2□□□□□ -0.78
VPS4A-201ENST00000254950 PINLYPA6NC86 204 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 RBM39Q14498 530 aaKnown RBP10.19□□□□□ -0.78
VPS4A-201ENST00000254950 C10orf128Q5T292 105 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 SIAH3Q8IW03 269 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 ASB5Q8WWX0 329 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 HAVCR1Q96D42 359 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 C11orf54Q9H0W9 315 aaPredicted RBP10.19□□□□□ -0.78
VPS4A-201ENST00000254950 GP6Q9HCN6 339 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 ZMIZ1Q9ULJ6 1067 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 LHFPL6Q9Y693 200 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 CDRT15L2A8MXV6 281 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 KIR3DL2P43630 455 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 ACTBL2Q562R1 376 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 PLXDC2Q6UX71 529 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 KCTD9Q7L273 389 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 ZNF611Q8N823 705 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 OR52I2Q8NH67 350 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 TRMT61AQ96FX7 289 aaKnown RBP10.19□□□□□ -0.78
VPS4A-201ENST00000254950 SRRQ9GZT4 340 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 WASF3Q9UPY6 502 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 A0A0A6YYH2 397 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 OR14I1A6ND48 311 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 A6NJ64 397 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 ARPC1BO15143 372 aaKnown RBP10.19□□□□□ -0.78
VPS4A-201ENST00000254950 PRAF2O60831 178 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 CCL2P13500 99 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 ZNF83P51522 516 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 SCAND1P57086 179 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 TAS2R46P59540 309 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 HIKESHIQ53FT3 197 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 SFRP5Q5T4F7 317 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 THOC7Q6I9Y2 204 aaKnown RBP10.19□□□□□ -0.78
VPS4A-201ENST00000254950 SLC22A25Q6T423 547 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 OR6K3Q8NGY3 331 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms