RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TMEM246Q9BRR3 403 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 DPAGT1Q9H3H5 408 aa13.49□□□□□ -0.25
CLN3-264ENST00000637985 IGHV1-69DA0A0B4J2H0 117 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 A0A0U1RQK1 487 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 OR6C68A6NDL8 312 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 C22orf46C9J442 243 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 IFNL4K9M1U5 179 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 TNFRSF11BO00300 401 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 ENSAO43768 121 aaKnown RBP13.48□□□□□ -0.25
CLN3-264ENST00000637985 FSTL3O95633 263 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 IGHV1-69P01742 117 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 MAGEA2P43356 314 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 ECH1Q13011 328 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 KRTAP27-1Q3LI81 207 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 WDR25Q64LD2 544 aaPredicted RBP13.48□□□□□ -0.25
CLN3-264ENST00000637985 SLC18B1Q6NT16 456 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 CORO6Q6QEF8 472 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 NLRC3Q7RTR2 1065 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.48□□□□□ -0.25
CLN3-264ENST00000637985 GALNT4Q8N4A0 578 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 SDR9C7Q8NEX9 313 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 OR52L1Q8NGH7 329 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 OR2AJ1Q8NGZ0 328 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 CFHR4Q92496 578 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 OR2V2Q96R30 315 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 MAGIXQ9H6Y5 334 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 IL20Q9NYY1 176 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 FBLN5Q9UBX5 448 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 CLN8Q9UBY8 286 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 CYB5R1Q9UHQ9 305 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 KCNG2Q9UJ96 466 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 CDH10Q9Y6N8 788 aa13.48□□□□□ -0.25
CLN3-264ENST00000637985 DYNC2H1Q8NCM8 4307 aaKnown RBP13.48□□□□□ -0.25
CLN3-264ENST00000637985 ZNF879B4DU55 563 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 K7EIL1 84 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 TOX4O94842 621 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 HLA-DQA2P01906 255 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 ATP6V1B2P21281 511 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 TGFBR2P37173 567 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 COL10A1Q03692 680 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLN3-264ENST00000637985 RSPO1Q2MKA7 263 aaPredicted RBP13.47□□□□□ -0.25
CLN3-264ENST00000637985 ZNF404Q494X3 552 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 SLC35F1Q5T1Q4 408 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 FOXB2Q5VYV0 432 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 ZNF770Q6IQ21 691 aaPredicted RBP13.47□□□□□ -0.25
CLN3-264ENST00000637985 LCN8Q6JVE9 175 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 ZNF841Q6ZN19 808 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 COLCA1Q6ZS62 124 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 OR8G5Q8NG78 346 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 OR9Q2Q8NGE9 314 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 OR4C15Q8NGM1 316 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 OR13G1Q8NGZ3 307 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 ZNF582Q96NG8 517 aaPredicted RBP13.47□□□□□ -0.25
CLN3-264ENST00000637985 PITX2Q99697 317 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 ATF6BQ99941 703 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 BTBD10Q9BSF8 475 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 EGLN3Q9H6Z9 239 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 PTTG3PQ9NZH4 202 aa13.47□□□□□ -0.25
CLN3-264ENST00000637985 TCRBV5S2A0A599 114 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 BHLHE40O14503 412 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 PHYHO14832 338 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 CCNB2O95067 398 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 FAM107AO95990 144 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 CALB2P22676 271 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 GGT2P36268 569 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 ERFP50548 548 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 TRIM25Q14258 630 aaKnown RBP13.46□□□□□ -0.25
CLN3-264ENST00000637985 CLEC12AQ5QGZ9 265 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 SLC35E4Q6ICL7 350 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 OR2T2Q6IF00 324 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 CFAP77Q6ZQR2 320 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 RASSF6Q6ZTQ3 369 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 DHFR2Q86XF0 187 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 LINC00346Q8IVM7 164 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 OR5AS1Q8N127 324 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 ATG16L2Q8NAA4 619 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 ZNF420Q8TAQ5 688 aaPredicted RBP13.46□□□□□ -0.25
CLN3-264ENST00000637985 ITPKCQ96DU7 683 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 DDOQ99489 341 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 KRTAP17-1Q9BYP8 105 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 FN3KQ9H479 309 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 TOR3AQ9H497 397 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 VPREB3Q9UKI3 123 aa13.46□□□□□ -0.25
CLN3-264ENST00000637985 IQCF6A8MYZ5 107 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 CYB5R3P00387 301 aaPredicted RBP13.45□□□□□ -0.26
CLN3-264ENST00000637985 GASTP01350 101 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 LIPFP07098 398 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 ACSM4P0C7M7 580 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 ZNF823P16415 610 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 FAM98BQ52LJ0 330 aaKnown RBP13.45□□□□□ -0.26
CLN3-264ENST00000637985 C11orf44Q8N8P7 122 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 OR2T4Q8NH00 348 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 WDFY2Q96P53 400 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 HCAR1Q9BXC0 346 aa13.45□□□□□ -0.26
CLN3-264ENST00000637985 PNRC2Q9NPJ4 139 aaKnown RBP13.45□□□□□ -0.26
CLN3-264ENST00000637985 MRPL22Q9NWU5 206 aaKnown RBP13.45□□□□□ -0.26
CLN3-264ENST00000637985 PRPF19Q9UMS4 504 aaKnown RBP13.45□□□□□ -0.26
CLN3-264ENST00000637985 A0A1B0GWJ7 208 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 F5H5K5 113 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms