RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 NUDT16L1Q9BRJ7 211 aaKnown RBP5.5□□□□□ -1.53
SCN1A-212ENST00000636194 ALKBH7Q9BT30 221 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-212ENST00000636194 NTMT1Q9BV86 223 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 TRAPPC1Q9Y5R8 145 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 STYXL1Q9Y6J8 313 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 SCN4AP35499 1836 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 TIAM2Q8IVF5 1701 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 A0A0G2JLL6 359 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-212ENST00000636194 POM121CA8CG34 1229 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 UBL3O95164 117 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 KRASP01116 189 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 CPMP14384 443 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 GPR85P60893 370 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 ZNF787Q6DD87 383 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 PRRT2Q7Z6L0 340 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-212ENST00000636194 LHFPL4Q7Z7J7 247 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 LRRTM3Q86VH5 581 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 VN1R17PQ8TDU5 208 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 RAB1CQ92928 201 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 MISP3Q96FF7 219 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 SIRT7Q9NRC8 400 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 SLAMF8Q9P0V8 285 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 SLC45A2Q9UMX9 530 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 KIF13BQ9NQT8 1826 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 FAM171A2A8MVW0 826 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 H3BNC9 293 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 TBX18O95935 607 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 CNR2P34972 360 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 CLDN18P56856 261 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 FZD2Q14332 565 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 STUMQ69YW2 141 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 FAM71E1Q6IPT2 247 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 CLEC9AQ6UXN8 241 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 NETO2Q8NC67 525 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 FDCSPQ8NFU4 85 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 ZFAND2BQ8WV99 257 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 NXF2Q9GZY0 626 aaKnown RBP5.5□□□□□ -1.53
SCN1A-212ENST00000636194 GLTPD2A6NH11 291 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 GPR31O00270 319 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 DCTN6O00399 190 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 RAF1P04049 648 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 ZNF688P0C7X2 276 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 PBX1P40424 430 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 TAGLNQ01995 201 aaKnown RBP5.5□□□□□ -1.53
SCN1A-212ENST00000636194 MICBQ29980 383 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 APOBEC3HQ6NTF7 200 aaKnown RBP5.5□□□□□ -1.53
SCN1A-212ENST00000636194 SHISA6Q6ZSJ9 500 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 Q6ZVL8 140 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 C5orf17Q8NAS9 161 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 LRRC15Q8TF66 581 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 NPFFR1Q9GZQ6 430 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 TNFRSF19Q9NS68 423 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 CNIH4Q9P003 139 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 SLCO3A1Q9UIG8 710 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 SLC17A4Q9Y2C5 497 aa5.5□□□□□ -1.53
SCN1A-212ENST00000636194 CLEC18AA5D8T8 446 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 CTNSO60931 367 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 PMP2P02689 132 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 HTR1FP30939 366 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 SLC5A2P31639 672 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 LBX1P52954 281 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 SELENOWP63302 87 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 EVX2Q03828 476 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 C1orf61Q13536 156 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 CLLU1Q5K131 121 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 SAMD13Q5VXD3 122 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 UQCC3Q6UW78 93 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 C6orf15Q6UXA7 325 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-212ENST00000636194 PDPNQ86YL7 162 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 SLC39A11Q8N1S5 342 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 CLEC18CQ8NCF0 446 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 OR51F2Q8NH61 342 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 OR13C6PQ8NH95 151 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 PELI1Q96FA3 418 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 ACY3Q96HD9 319 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 OR5M11Q96RB7 305 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 OR2D2Q9H210 308 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 FLVCR1Q9Y5Y0 555 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 IGSF23A1L1A6 192 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 OR2A25A4D2G3 310 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 TISP43B9A030 160 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 C9orf172C9J069 976 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 SLC25A4P12235 298 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 SDC1P18827 310 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 TBXA2RP21731 343 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 KLRK1P26718 216 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 S100A11P31949 105 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 APOBEC1P41238 236 aaKnown RBP5.49□□□□□ -1.53
SCN1A-212ENST00000636194 GALNT2Q10471 571 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 FCN2Q15485 313 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 DEFB133Q30KQ1 61 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 TMEM128Q5BJH2 165 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 RPUSD3Q6P087 351 aaKnown RBP5.49□□□□□ -1.53
SCN1A-212ENST00000636194 TP53I13Q8NBR0 393 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-212ENST00000636194 OR51S1Q8NGJ8 323 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 OR51H1Q8NH63 302 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 TMEM191AQ9H0A3 160 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 SMG9Q9H0W8 520 aaKnown RBP5.49□□□□□ -1.53
SCN1A-212ENST00000636194 TAS2R5Q9NYW4 299 aa5.49□□□□□ -1.53
SCN1A-212ENST00000636194 IL17BQ9UHF5 180 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms