RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 SLC25A44Q96H78 314 aaPredicted RBP6.62□□□□□ -1.35
CLK1-215ENST00000621181 TMEM80Q96HE8 168 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 WDFY2Q96P53 400 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 IL4I1Q96RQ9 567 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 EGLN1Q9GZT9 426 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 C6orf62Q9GZU0 229 aaPredicted RBP6.62□□□□□ -1.35
CLK1-215ENST00000621181 NDUFB11Q9NX14 153 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 TBC1D24Q9ULP9 559 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 AUP1Q9Y679 476 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 NOTCH1P46531 2555 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 PPIAL4EA0A075B759 164 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 PPIAL4CA0A0B4J2A2 164 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 PPIAL4DF5H284 164 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 LOC110117498-PIK3R3F6TDL0 507 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 DHHO43323 396 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 RNF13O43567 381 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 PRKYO43930 277 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 SOX14O95416 240 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 IGHV1-46P01743 117 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 IGHV3-13P01766 116 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 QDPRP09417 244 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 PPIAL4FP0DN26 164 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 TNFSF8P32971 234 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 SMIM11AP58511 58 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 CDK5Q00535 292 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 HSF2Q03933 536 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.62□□□□□ -1.35
CLK1-215ENST00000621181 COX10Q12887 443 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 MLLT11Q13015 90 aaPredicted RBP6.62□□□□□ -1.35
CLK1-215ENST00000621181 MELKQ14680 651 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 SPHARQ15513 63 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 ZNF718Q3SXZ3 478 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 SPATA46Q5T0L3 261 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 C1orf94Q6P1W5 598 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 LRFN4Q6PJG9 635 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 UNQ6126/PRO20091Q6UXV3 157 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 NHLRC1Q6VVB1 395 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 LRRC18Q8N456 261 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 POC5Q8NA72 575 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 ZNF485Q8NCK3 441 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 DEFB108BQ8NET1 73 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 TMEM54Q969K7 222 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 C1orf147Q96MC9 270 aaPredicted RBP6.62□□□□□ -1.35
CLK1-215ENST00000621181 TMEM43Q9BTV4 400 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 MRI1Q9BV20 369 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 CCDC32Q9BV29 185 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 MS4A7Q9GZW8 240 aaPredicted RBP6.62□□□□□ -1.35
CLK1-215ENST00000621181 NANSQ9NR45 359 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 MMP26Q9NRE1 261 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 PLEK2Q9NYT0 353 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 DNAJC27Q9NZQ0 273 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 ZNF69Q9UC07 566 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 TMCC3Q9ULS5 477 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 DIMT1Q9UNQ2 313 aaKnown RBP6.62□□□□□ -1.35
CLK1-215ENST00000621181 V9GYH0 126 aa6.62□□□□□ -1.35
CLK1-215ENST00000621181 HTR3EA5X5Y0 456 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 ZNF670-ZNF695F2Z2N8 137 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 IGHG1P01857 330 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 RNASE1P07998 156 aaKnown RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 HSMCR30P0CW71 290 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 POU1F1P28069 291 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 S100A5P33763 92 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 ZNF84P51523 738 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 TPTEP56180 551 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 CLRN1P58418 232 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 ZNF154Q13106 437 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 PIN1Q13526 163 aaPredicted RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 MED22Q15528 200 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 LEG1Q6P5S2 330 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 CCBE1Q6UXH8 406 aaPredicted RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 BCDIN3DQ7Z5W3 292 aaKnown RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 ZNF101Q8IZC7 436 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 BCL6BQ8N143 479 aaPredicted RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 KLHL36Q8N4N3 616 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 TCEANCQ8N8B7 351 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 OR52I1Q8NGK6 324 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 RASSF5Q8WWW0 418 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 TAF15Q92804 592 aaKnown RBP eCLIP6.61□□□□□ -1.35
CLK1-215ENST00000621181 ZNF607Q96SK3 696 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 TSSK6Q9BXA6 273 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 SLITRK2Q9H156 845 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 POLR2J3Q9H1A7 115 aaKnown RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 KCNN2Q9H2S1 579 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 SMURF1Q9HCE7 757 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 FGF20Q9NP95 211 aaPredicted RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 EIF3KQ9UBQ5 218 aaKnown RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 ZNF229Q9UJW7 825 aa6.61□□□□□ -1.35
CLK1-215ENST00000621181 SF3B6Q9Y3B4 125 aaKnown RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 RPL36Q9Y3U8 105 aaKnown RBP6.61□□□□□ -1.35
CLK1-215ENST00000621181 PNMA8CA0A1B0GUJ8 204 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 MCIDASD6RGH6 385 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 M0R3H8 397 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 OR10H3O60404 316 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 CH25HO95992 272 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 IGHMP01871 453 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 HIST1H2ABP04908 130 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 SBK2P0C263 348 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 PGA4P0DJD7 388 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 PGA3P0DJD8 388 aa6.6□□□□□ -1.35
CLK1-215ENST00000621181 CPEP16870 476 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms