RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RIN1Q13671 783 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 SLC25A30Q5SVS4 291 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 FAM201AQ5SY85 155 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 AVPI1Q5T686 147 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 LHFPL3Q86UP9 236 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.42□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF679Q8IYX0 411 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 SNX33Q8WV41 574 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 TRUB1Q8WWH5 349 aaKnown RBP11.42□□□□□ -0.58
LINC00540-202ENST00000616974 REEP6Q96HR9 211 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 FGF23Q9GZV9 251 aaPredicted RBP11.42□□□□□ -0.58
LINC00540-202ENST00000616974 G6PC2Q9NQR9 355 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 hCG_38984A0A1B0GV85 526 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 TMEM269A0A1B0GVZ9 245 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 TPD52L2O43399 206 aaKnown RBP11.42□□□□□ -0.58
LINC00540-202ENST00000616974 XPNPEP2O43895 674 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 LMX1BO60663 402 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 ATP6V1G2O95670 118 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 ATP6V1E1P36543 226 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 OR12D2P58182 307 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 SELENOVP59797 346 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 CDK5R2Q13319 367 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 MPPED2Q15777 294 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 CLEC2AQ6UVW9 174 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 DHRSXQ8N5I4 330 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 C19orf18Q8NEA5 215 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 OR8G5Q8NG78 346 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 UBASH3BQ8TF42 649 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 PGAM5Q96HS1 289 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 OR2V2Q96R30 315 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 SLC30A2Q9BRI3 323 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 MROQ9BYG7 248 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 ISG20L2Q9H9L3 353 aaKnown RBP11.42□□□□□ -0.58
LINC00540-202ENST00000616974 SAP30LQ9HAJ7 183 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 GTF2A1LQ9UNN4 478 aa11.42□□□□□ -0.58
LINC00540-202ENST00000616974 TTRP02766 147 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 PMELP40967 661 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 PRAMEF6Q5VXH4 476 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 MRPL21Q7Z2W9 205 aaKnown RBP11.41□□□□□ -0.58
LINC00540-202ENST00000616974 RDH10Q8IZV5 341 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 PACRGLQ8N7B6 248 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF555Q8NEP9 628 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 OR5L1Q8NGL2 311 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 OR51E1Q8TCB6 317 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 CCL17Q92583 94 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 RORBQ92753 470 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 SPSB4Q96A44 273 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 C18orf12Q96KH6 178 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 SIGLEC11Q96RL6 698 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 RHBDD3Q9Y3P4 386 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 LOC100289279A0A1B0GTE1 492 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 E9PI62 339 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 INHBBP09529 407 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 NANOS3P60323 173 aaKnown RBP11.41□□□□□ -0.58
LINC00540-202ENST00000616974 TNFAIP6P98066 277 aaPredicted RBP11.41□□□□□ -0.58
LINC00540-202ENST00000616974 TIGD6Q17RP2 521 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 LIPNQ5VXI9 398 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 XAF1Q6GPH4 301 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 WDR86Q86TI4 376 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF786Q8N393 782 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 PRSS35Q8N3Z0 413 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 OR52I1Q8NGK6 324 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 TFAP2CQ92754 450 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 PBOV1Q9GZY1 135 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 GPR160Q9UJ42 338 aa11.41□□□□□ -0.58
LINC00540-202ENST00000616974 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.41□□□□□ -0.58
LINC00540-202ENST00000616974 ZNF670-ZNF695F2Z2N8 137 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 J3QW42 95 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 LY6G6DO95868 133 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 CAPGP40121 348 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 GSK3AP49840 483 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 MALLQ13021 153 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 UNQ6126/PRO20091Q6UXV3 157 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 RHOUQ7L0Q8 258 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 YIPF7Q8N8F6 280 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 NEU4Q8WWR8 484 aaPredicted RBP11.4□□□□□ -0.58
LINC00540-202ENST00000616974 RFKQ969G6 155 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 RDH12Q96NR8 316 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 BARX1Q9HBU1 254 aaPredicted RBP11.4□□□□□ -0.58
LINC00540-202ENST00000616974 GNG8Q9UK08 70 aa11.4□□□□□ -0.58
LINC00540-202ENST00000616974 IGHV1-69-2A0A0G2JMI3 117 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 GGT3PA6NGU5 568 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 OR2T7P0C7T2 308 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 NR4A2P43354 598 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 KIR3DL2P43630 455 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 RIDAP52758 137 aaKnown RBP11.39□□□□□ -0.59
LINC00540-202ENST00000616974 KCTD18Q6PI47 426 aaPredicted RBP11.39□□□□□ -0.59
LINC00540-202ENST00000616974 ZNF826PQ6ZT77 177 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 OR2T27Q8NH04 317 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 OR10AC1Q8NH08 325 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 FAM71F1Q96KD3 344 aaPredicted RBP11.39□□□□□ -0.59
LINC00540-202ENST00000616974 GPR84Q9NQS5 396 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 DECR2Q9NUI1 292 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 UFSP2Q9NUQ7 469 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 CLEC2DQ9UHP7 191 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 EXOGQ9Y2C4 368 aaKnown RBP11.39□□□□□ -0.59
LINC00540-202ENST00000616974 RRP15Q9Y3B9 282 aaKnown RBP11.39□□□□□ -0.59
LINC00540-202ENST00000616974 A0A1B0GTI1 187 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 H3BSA7 217 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 P2RY10O00398 339 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms