RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	ACTG1	P63261	375 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	ETFDH	Q16134	617 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	GLT8D1	Q68CQ7	371 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF626	Q68DY1	528 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF704	Q6ZNC4	412 aa	Predicted RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	AAED1	Q7RTV5	226 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	CATSPERD	Q86XM0	798 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	IZUMO1	Q8IYV9	350 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	UXS1	Q8NBZ7	420 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	OR52N5	Q8NH56	324 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	TMEM54	Q969K7	222 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	TMEM45B	Q96B21	275 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	OR2A7	Q96R45	310 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	PRORY	Q9H606	182 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	BCO1	Q9HAY6	547 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	SCPEP1	Q9HB40	452 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	PARPBP	Q9NWS1	579 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	GLTP	Q9NZD2	209 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	ING1	Q9UK53	422 aa	Predicted RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	AUP1	Q9Y679	476 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	SMLR1	H3BR10	107 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	ERVH48-1	M5A8F1	160 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	NOS1AP	O75052	506 aa	Predicted RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	CTAG2	O75638	210 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	IFNA7	P01567	189 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	QDPR	P09417	244 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	IGFBP3	P17936	291 aa	Predicted RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	CLDN12	P56749	244 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	RAB11B	Q15907	218 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	LRFN4	Q6PJG9	635 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	KRT77	Q7Z794	578 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	ADGRE4P	Q86SQ3	457 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	C20orf196	Q8IYI0	205 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	NKAIN3	Q8N8D7	197 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341		Q8NA96	180 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	DNAAF1	Q8NEP3	725 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	TSEN15	Q8WW01	171 aa	Known RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	FOXRED1	Q96CU9	486 aa	Predicted RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	ORAI1	Q96D31	301 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	ALX4	Q9H161	411 aa	Predicted RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	CLEC4M	Q9H2X3	399 aa	Predicted RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	HEXA-AS1	Q9H8Q6	139 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	GP6	Q9HCN6	339 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	SLC23A1	Q9UHI7	598 aa		10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	FOXD3	Q9UJU5	478 aa	Predicted RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	NOSIP	Q9Y314	301 aa	Known RBP	10.29	□□□□□ -0.76
VRK3-223	ENST00000601341	BOD1L1	Q8NFC6	3051 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	IGKV1D-43	A0A0B4J1Z2	117 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	LOC390937	A0A1W2PQ73	354 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	AHRR	A9YTQ3	701 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	MRPL33	O75394	65 aa	Known RBP	10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	SRSF10	O75494	262 aa	Known RBP	10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	RGS11	O94810	467 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	HPX	P02790	462 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	ACHE	P22303	614 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	MAGEB1	P43366	347 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	VEGFC	P49767	419 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	ZP1	P60852	638 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	ADAM8	P78325	824 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	ESCO2	Q56NI9	601 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	RNASE12	Q5GAN4	147 aa	Known RBP	10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF324B	Q6AW86	544 aa	Predicted RBP	10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	SFRP4	Q6FHJ7	346 aa	Predicted RBP	10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	SLC25A47	Q6Q0C1	308 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	RHOU	Q7L0Q8	258 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	P4HA3	Q7Z4N8	544 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	CISD2	Q8N5K1	135 aa	Known RBP	10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	ZNF680	Q8NEM1	530 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	SLC26A10	Q8NG04	563 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	OR11H4	Q8NGC9	324 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	OR6M1	Q8NGM8	313 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	OR5M9	Q8NGP3	310 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	ASB5	Q8WWX0	329 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	FAM3D	Q96BQ1	224 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	AMELY	Q99218	206 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	ABHD6	Q9BV23	337 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	HHLA2	Q9UM44	414 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	DHDH	Q9UQ10	334 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341		R4GMQ9	66 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	PIEZO2	Q9H5I5	2752 aa		10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	MAP1B	P46821	2468 aa	Known RBP	10.28	□□□□□ -0.76
VRK3-223	ENST00000601341	PRRC2C	Q9Y520	2896 aa	Known RBP	10.27	□□□□□ -0.76
VRK3-223	ENST00000601341	CIB4	A0PJX0	185 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	OR6C65	A6NJZ3	312 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	SLC22A5	O76082	557 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	GPANK1	O95872	356 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	MAS1	P04201	325 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	ITGA5	P08648	1049 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	UBC	P0CG48	685 aa	Known RBP	10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	AKAIN1	P0CW23	69 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	SFTPC	P11686	197 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	GABRA1	P14867	456 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF823	P16415	610 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	LAP3	P28838	519 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	NTF4	P34130	210 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	GUCA1A	P43080	201 aa	Predicted RBP	10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	POU3F4	P49335	361 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	MMP16	P51512	607 aa		10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF133	P52736	654 aa	Predicted RBP	10.27	□□□□□ -0.77
VRK3-223	ENST00000601341	SNRPD2	P62316	118 aa	Known RBP	10.27	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms