RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, human

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USE1-208	ENST00000600970	KLRD1	Q13241	179 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	COQ5	Q5HYK3	327 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	METTL21C	Q5VZV1	264 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	DPY19L2P2	Q6ZN68	376 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	C1orf122	Q6ZSJ8	110 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	OR6V1	Q8N148	313 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970		Q8N7P7	452 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	C11orf44	Q8N8P7	122 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	OR5R1	Q8NH85	324 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	SLC7A13	Q8TCU3	470 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	CFHR4	Q92496	578 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	ANKRD19P	Q9H560	264 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	DNAJB11	Q9UBS4	358 aa		13.74	□□□□□ -0.21
USE1-208	ENST00000600970	hCG_1807616	A0A1W2PRN6	198 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	GGT3P	A6NGU5	568 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970		M0R135	149 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	EEF1B2	P24534	225 aa	Known RBP	13.73	□□□□□ -0.21
USE1-208	ENST00000600970	OMP	P47874	163 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	TPTE	P56180	551 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	SNAI3	Q3KNW1	292 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	IFI44L	Q53G44	452 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	OXLD1	Q5BKU9	147 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	TSEN54	Q7Z6J9	526 aa	Known RBP	13.73	□□□□□ -0.21
USE1-208	ENST00000600970	PNKD	Q8N490	385 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	SPERT	Q8NA61	448 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	OR2AJ1	Q8NGZ0	328 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	OR2AE1	Q8NHA4	323 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	PPP1R35	Q8TAP8	253 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	ZNF799	Q96GE5	643 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	RSRC1	Q96IZ7	334 aa	Known RBP	13.73	□□□□□ -0.21
USE1-208	ENST00000600970	DMRTB1	Q96MA1	342 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	CCL13	Q99616	98 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970	MRPL15	Q9P015	296 aa	Known RBP	13.73	□□□□□ -0.21
USE1-208	ENST00000600970	CYB5R1	Q9UHQ9	305 aa		13.73	□□□□□ -0.21
USE1-208	ENST00000600970		A0A0G2JND7	137 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	ZNF682	O95780	498 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	PAH	P00439	452 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	SAA4	P35542	130 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	KIR2DS4	P43632	304 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	PCK2	Q16822	640 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	RFX4	Q33E94	735 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	SLC36A3	Q495N2	470 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	WDR38	Q5JTN6	314 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	CMTM4	Q8IZR5	234 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	MAP6	Q96JE9	813 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	NMNAT3	Q96T66	252 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	TMEM120A	Q9BXJ8	343 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	TOR3A	Q9H497	397 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	ADA2	Q9NZK5	511 aa		13.72	□□□□□ -0.21
USE1-208	ENST00000600970	GMPR2	Q9P2T1	348 aa	Known RBP	13.72	□□□□□ -0.21
USE1-208	ENST00000600970	MEIOC	A2RUB1	952 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	BBIP1	A8MTZ0	92 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	MICB	Q29980	383 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	GLYATL3	Q5SZD4	288 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	FKBP9P1	Q75LS8	142 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	CBLL1	Q75N03	491 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	C11orf53	Q8IXP5	236 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	FAM216B	Q8N7L0	139 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	TNFRSF14	Q92956	283 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	ITPKC	Q96DU7	683 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	ERMAP	Q96PL5	475 aa	Predicted RBP	13.71	□□□□□ -0.21
USE1-208	ENST00000600970	DCTN5	Q9BTE1	182 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	C14orf119	Q9NWQ9	140 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	13.71	□□□□□ -0.21
USE1-208	ENST00000600970	GID8	Q9NWU2	228 aa		13.71	□□□□□ -0.21
USE1-208	ENST00000600970	PRPF19	Q9UMS4	504 aa	Known RBP	13.71	□□□□□ -0.21
USE1-208	ENST00000600970	DNAH3	Q8TD57	4116 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	13.7	□□□□□ -0.22
USE1-208	ENST00000600970		H3BUX3	64 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	BHLHE40	O14503	412 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	EDF1	O60869	148 aa	Known RBP	13.7	□□□□□ -0.22
USE1-208	ENST00000600970	REN	P00797	406 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	MUC1	P15941	1255 aa	Predicted RBP	13.7	□□□□□ -0.22
USE1-208	ENST00000600970	MZT1	Q08AG7	82 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	KLF10	Q13118	480 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	C11orf88	Q6PI97	169 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	SMARCD3	Q6STE5	483 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	SLC36A1	Q7Z2H8	476 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	ZBTB46	Q86UZ6	589 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	CYP4Z1	Q86W10	505 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	LNX2	Q8N448	690 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	KLHDC1	Q8N7A1	406 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	OR56B2P	Q8NGI1	322 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	C8orf46	Q8TAG6	207 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	LRRC29	Q8WV35	223 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	SPTSSA	Q969W0	71 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	HSH2D	Q96JZ2	352 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	RNPEPL1	Q9HAU8	725 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	RPRD1B	Q9NQG5	326 aa	Known RBP	13.7	□□□□□ -0.22
USE1-208	ENST00000600970	INTS9	Q9NV88	658 aa	Known RBP	13.7	□□□□□ -0.22
USE1-208	ENST00000600970	NECAP2	Q9NVZ3	263 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970	ENPP4	Q9Y6X5	453 aa		13.7	□□□□□ -0.22
USE1-208	ENST00000600970		A0A1W2PRQ8	180 aa		13.69	□□□□□ -0.22
USE1-208	ENST00000600970	UNC119B	A6NIH7	251 aa		13.69	□□□□□ -0.22
USE1-208	ENST00000600970	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	13.69	□□□□□ -0.22
USE1-208	ENST00000600970	CXCR6	O00574	342 aa		13.69	□□□□□ -0.22
USE1-208	ENST00000600970	ACOT8	O14734	319 aa		13.69	□□□□□ -0.22
USE1-208	ENST00000600970	NDUFB3	O43676	98 aa		13.69	□□□□□ -0.22
USE1-208	ENST00000600970	XPNPEP2	O43895	674 aa		13.69	□□□□□ -0.22
USE1-208	ENST00000600970	HLA-DQA2	P01906	255 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms