RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PQLC1Q8N2U9 271 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 OR56B2PQ8NGI1 322 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 OR8J1Q8NGP2 316 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 Q8TCH9 128 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 THEM6Q8WUY1 208 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 HRASLS5Q96KN8 279 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 IL4I1Q96RQ9 567 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 CNN2Q99439 309 aaKnown RBP13.6□□□□□ -0.23
TRIM28-213ENST00000598355 MNTQ99583 582 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 RIBC2Q9H4K1 309 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 RGCCQ9H4X1 137 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 NARFLQ9H6Q4 476 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 TMEM100Q9NV29 134 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 TREM2Q9NZC2 230 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 LAMP5Q9UJQ1 280 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 CDC42EP3Q9UKI2 254 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 NOP16Q9Y3C1 178 aaKnown RBP13.6□□□□□ -0.23
TRIM28-213ENST00000598355 TMEM14AQ9Y6G1 99 aa13.6□□□□□ -0.23
TRIM28-213ENST00000598355 TMEM178BH3BS89 294 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 TGFAP01135 160 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 HLA-DPB1P04440 258 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 ANXA2P07355 339 aaKnown RBP13.59□□□□□ -0.23
TRIM28-213ENST00000598355 MRPL3P09001 348 aaKnown RBP13.59□□□□□ -0.23
TRIM28-213ENST00000598355 CFL1P23528 166 aaKnown RBP13.59□□□□□ -0.23
TRIM28-213ENST00000598355 TMEM155Q4W5P6 130 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 KCTD18Q6PI47 426 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-213ENST00000598355 FAM57BQ71RH2 274 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 KLBQ86Z14 1044 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 RFLNBQ8N5W9 214 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 ASB17Q8WXJ9 295 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 SGK3Q96BR1 496 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 RAB39BQ96DA2 213 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 REEP6Q96HR9 211 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 OR8B4Q96RC9 309 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 ZNF665Q9H7R5 613 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 FAM206AQ9NX38 181 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 DNAJC27Q9NZQ0 273 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 LPAR3Q9UBY5 353 aa13.59□□□□□ -0.23
TRIM28-213ENST00000598355 ATRQ13535 2644 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 GMDSO60547 372 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF254O75437 659 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 IGLV3-1P01715 115 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 MSMBP08118 114 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 SBK2P0C263 348 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 HTR1FP30939 366 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 RBMXP38159 391 aaKnown RBP13.58□□□□□ -0.24
TRIM28-213ENST00000598355 HCCSP53701 268 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 BTG1P62324 171 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 KRT74Q7RTS7 529 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF679Q8IYX0 411 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 CBR4Q8N4T8 237 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 OR8B12Q8NGG6 310 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 SPRYD4Q8WW59 207 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-213ENST00000598355 ERGIC1Q969X5 290 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 ADAT1Q9BUB4 502 aaKnown RBP13.58□□□□□ -0.24
TRIM28-213ENST00000598355 OR10A2Q9H208 303 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 WARS2Q9UGM6 360 aaKnown RBP13.58□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF391Q9UJN7 358 aa13.58□□□□□ -0.24
TRIM28-213ENST00000598355 A0A0U1RQV5 110 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 GGT3PA6NGU5 568 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 ACOD1A6NK06 481 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 F5H0A9 414 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-213ENST00000598355 TBX1O43435 398 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 SRSF10O75494 262 aaKnown RBP13.57□□□□□ -0.24
TRIM28-213ENST00000598355 CA6P23280 308 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 PMELP40967 661 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 TMED1Q13445 227 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 ZMYND11Q15326 602 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 TIGD6Q17RP2 521 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 CHRFAM7AQ494W8 412 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 SLC25A30Q5SVS4 291 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 KRT77Q7Z794 578 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 PEG10Q86TG7 708 aaKnown RBP13.57□□□□□ -0.24
TRIM28-213ENST00000598355 LRRC28Q86X40 367 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-213ENST00000598355 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-213ENST00000598355 SLC35F2Q8IXU6 374 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 PLPP7Q8NBV4 271 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 OR51F2Q8NH61 342 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 TRUB1Q8WWH5 349 aaKnown RBP13.57□□□□□ -0.24
TRIM28-213ENST00000598355 ITFG2Q969R8 447 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 EME1Q96AY2 570 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 LYZL4Q96KX0 146 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 MBOAT4Q96T53 435 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 C9orf16Q9BUW7 83 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 CLN6Q9NWW5 311 aa13.57□□□□□ -0.24
TRIM28-213ENST00000598355 PHYHO14832 338 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 FAM157CP0CG43 387 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 GSK3AP49840 483 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 CDC42P60953 191 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 POU4F2Q12837 409 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 OR8G1Q15617 311 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 CR1LQ2VPA4 569 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 FAM120AOSQ5T036 256 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 MOGAT3Q86VF5 341 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 GLCCI1Q86VQ1 547 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 SPERTQ8NA61 448 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 ZNF420Q8TAQ5 688 aaPredicted RBP13.56□□□□□ -0.24
TRIM28-213ENST00000598355 FAM81AQ8TBF8 368 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 TMEM186Q96B77 213 aa13.56□□□□□ -0.24
TRIM28-213ENST00000598355 PGAM5Q96HS1 289 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms