RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 ABHD6Q9BV23 337 aa10.53□□□□□ -0.72
UPF1-203ENST00000594504 C1QTNF5Q9BXJ0 243 aa10.53□□□□□ -0.72
UPF1-203ENST00000594504 TOR3AQ9H497 397 aa10.53□□□□□ -0.72
UPF1-203ENST00000594504 CENPMQ9NSP4 180 aa10.53□□□□□ -0.72
UPF1-203ENST00000594504 STARD10Q9Y365 291 aa10.53□□□□□ -0.72
UPF1-203ENST00000594504 NPTNQ9Y639 398 aa10.53□□□□□ -0.72
UPF1-203ENST00000594504 E9PQ18 207 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 J3QLI3 93 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 TIMM8AO60220 97 aaPredicted RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 NAA10P41227 235 aaPredicted RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 SEC61A1P61619 476 aaKnown RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 GRB2P62993 217 aaKnown RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 TNFAIP6P98066 277 aaPredicted RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 TAF13Q15543 124 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 ZIK1Q3SY52 487 aaPredicted RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 DRAM2Q6UX65 266 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 Q6ZR03 302 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 SLC16A9Q7RTY1 509 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 BCDIN3DQ7Z5W3 292 aaKnown RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 BPIFB2Q8N4F0 458 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 FAM81AQ8TBF8 368 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 TRUB1Q8WWH5 349 aaKnown RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 DUX5Q96PT3 197 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 MBOAT4Q96T53 435 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 KCNJ15Q99712 375 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 SUCNR1Q9BXA5 334 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 YIPF3Q9GZM5 350 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 EGLN1Q9GZT9 426 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 C8orf4Q9NR00 106 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 CYSLTR2Q9NS75 346 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 IMPAD1Q9NX62 359 aa10.52□□□□□ -0.73
UPF1-203ENST00000594504 CGGBP1Q9UFW8 167 aaPredicted RBP10.52□□□□□ -0.73
UPF1-203ENST00000594504 TRAPPC2LH3BP13 241 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 FSHBP01225 129 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 IGHV2-70P01814 119 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 APOC1P02654 83 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 LCATP04180 440 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 LYNP07948 512 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 CD55P08174 381 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 ADH4P08319 380 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 RAC2P15153 192 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 LIPAP38571 399 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 SLC6A9P48067 706 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 ELF3P78545 371 aaPredicted RBP10.51□□□□□ -0.73
UPF1-203ENST00000594504 CDK5R2Q13319 367 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 AWAT1Q58HT5 328 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 ZMAT1Q5H9K5 638 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 FBXW12Q6X9E4 464 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 BCL6BQ8N143 479 aaPredicted RBP10.51□□□□□ -0.73
UPF1-203ENST00000594504 THEM6Q8WUY1 208 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 DVL3Q92997 716 aaPredicted RBP10.51□□□□□ -0.73
UPF1-203ENST00000594504 HAVCR1Q96D42 359 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 CMBLQ96DG6 245 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 RDH12Q96NR8 316 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 JMJD8Q96S16 334 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 CNN2Q99439 309 aaKnown RBP10.51□□□□□ -0.73
UPF1-203ENST00000594504 TMEM106BQ9NUM4 274 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 HAO2Q9NYQ3 351 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 WARS2Q9UGM6 360 aaKnown RBP10.51□□□□□ -0.73
UPF1-203ENST00000594504 LAMP5Q9UJQ1 280 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 PURGQ9UJV8 347 aaKnown RBP10.51□□□□□ -0.73
UPF1-203ENST00000594504 ZDHHC8Q9ULC8 765 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 TMEM14AQ9Y6G1 99 aa10.51□□□□□ -0.73
UPF1-203ENST00000594504 MRPL3P09001 348 aaKnown RBP10.5□□□□□ -0.73
UPF1-203ENST00000594504 H2BFMP0C1H6 154 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 ALOX5APP20292 161 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 KITLGP21583 273 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 HSD11B1P28845 292 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 HTR1FP30939 366 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 OPRL1P41146 370 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 PRKXP51817 358 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 SNRPGP62308 76 aaKnown RBP10.5□□□□□ -0.73
UPF1-203ENST00000594504 UBA52P62987 128 aaKnown RBP10.5□□□□□ -0.73
UPF1-203ENST00000594504 SLC3A1Q07837 685 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 POU4F2Q12837 409 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 MALLQ13021 153 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 TMED1Q13445 227 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 SLC25A30Q5SVS4 291 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 SPATC1Q76KD6 591 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 NAA40Q86UY6 237 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 OR5AS1Q8N127 324 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 TEX29Q8N6K0 151 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 PACRGLQ8N7B6 248 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 ZNF283Q8N7M2 679 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 SIGLECL1Q8N7X8 197 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 DEFB108BQ8NET1 73 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 OR2Z1Q8NG97 314 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 ITLN1Q8WWA0 313 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 ASB17Q8WXJ9 295 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 TAF15Q92804 592 aaKnown RBP eCLIP10.5□□□□□ -0.73
UPF1-203ENST00000594504 RFKQ969G6 155 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 ZNF582Q96NG8 517 aaPredicted RBP10.5□□□□□ -0.73
UPF1-203ENST00000594504 AMELYQ99218 206 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 MNTQ99583 582 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 DCLRE1BQ9H816 532 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 SP140LQ9H930 580 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 PATZ1Q9HBE1 687 aaKnown RBP10.5□□□□□ -0.73
UPF1-203ENST00000594504 SMPD3Q9NY59 655 aaPredicted RBP10.5□□□□□ -0.73
UPF1-203ENST00000594504 PTTG3PQ9NZH4 202 aa10.5□□□□□ -0.73
UPF1-203ENST00000594504 ZNF69Q9UC07 566 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms