RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 DHRS9Q9BPW9 319 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SHC1P29353 583 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SLC35A2P78381 396 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SPATA46Q5T0L3 261 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 BTLAQ7Z6A9 289 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 TMEM200AQ86VY9 491 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 LSRQ86X29 649 aaPredicted RBP8.75□□□□□ -1.01
LIG3-216ENST00000593099 ZDHHC23Q8IYP9 409 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 ZNF441Q8N8Z8 693 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 ST8SIA2Q92186 375 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 SYT3Q9BQG1 590 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 ST6GALNAC5Q9BVH7 336 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 PPP1R14DQ9NXH3 145 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 TRAPPC2LQ9UL33 140 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 NBASA2RRP1 2371 aa8.75□□□□□ -1.01
LIG3-216ENST00000593099 TRDV1A0A1B0GX56 115 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 TGFBR3LH3BV60 316 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 APEX1P27695 318 aaKnown RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 ZNF774Q6NX45 483 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 DEFB108BQ8NET1 73 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 ST7LQ8TDW4 575 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 CASTOR1Q8WTX7 329 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 IL1F10Q8WWZ1 152 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 HGDQ93099 445 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 KCTD12Q96CX2 325 aaKnown RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 BSCL2Q96G97 398 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 SIGLEC12Q96PQ1 595 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 FGF20Q9NP95 211 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 RPH3ALQ9UNE2 315 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 ANAPC1Q9H1A4 1944 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 A0A1W2PQ09 198 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 RER1O15258 196 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 ATG12O94817 140 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 MTNR1BP49286 362 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 AP2S1P53680 142 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 EDDM3BP56851 147 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 BCL2A1Q16548 175 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 DEGS2Q6QHC5 323 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 GDPD3Q7L5L3 318 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 NFAM1Q8NET5 270 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 THAP6Q8TBB0 222 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 CDCA4Q9BXL8 241 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 ZCCHC4Q9H5U6 513 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 SLC22A13Q9Y226 551 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 ZNF816-ZNF321PA0A0X1KG74 233 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 A6NIN4 97 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 FFAR1O14842 300 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 P2RY6Q15077 328 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 SIGIRRQ6IA17 410 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 PDZD9Q8IXQ8 264 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 LINC00469Q8N7U9 141 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 OR1M1Q8NGA1 313 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 OR2G2Q8NGZ5 317 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 BARHL1Q9BZE3 327 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 ABCG5Q9H222 651 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 TMEFF2Q9UIK5 374 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 ZNF391Q9UJN7 358 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 MAGEB4O15481 346 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 TBX6O95947 436 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 AMY2AP04746 511 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 NDUFB7P17568 137 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 CTSSP25774 331 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 BLVRBP30043 206 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 FUT5Q11128 374 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 GLYATL3Q5SZD4 288 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 METTL11BQ5VVY1 283 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 DCDC5Q6ZRR9 648 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 CMTM1Q8IZ96 169 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 COMMD1Q8N668 190 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 OR6K3Q8NGY3 331 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 SPACA1Q9HBV2 294 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 GPR35Q9HC97 309 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 GNG12Q9UBI6 72 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 UBE2J1Q9Y385 318 aaPredicted RBP8.74□□□□□ -1.01
LIG3-216ENST00000593099 PIEZO1Q92508 2521 aa8.74□□□□□ -1.01
LIG3-216ENST00000593099 BPNT1O95861 308 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 CTU2Q2VPK5 515 aaKnown RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 EXOSC6Q5RKV6 272 aaKnown RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 NLRC3Q7RTR2 1065 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 ANGPTL5Q86XS5 388 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 BMPERQ8N8U9 685 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 OR51A2Q8NGJ7 313 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 SMAP2Q8WU79 429 aaPredicted RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 RNF32Q9H0A6 362 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 ZNF286AQ9HBT8 521 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 POLE4Q9NR33 117 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 IGHV3-64DA0A0J9YX35 117 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 TCAPO15273 167 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 LSM6P62312 80 aaKnown RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 ZNF239Q16600 458 aaKnown RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 CNIH2Q6PI25 160 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 GLIPR1L1Q6UWM5 242 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 APOOLQ6UXV4 268 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 TMEM185AQ8NFB2 350 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 ADAM19Q9H013 955 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 DUSP21Q9H596 190 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 TXNL4BQ9NX01 149 aaKnown RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 ZNF701M0R085 212 aaPredicted RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 DEGS1O15121 323 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 SPRY3O43610 288 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms