RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CARTPTQ16568 116 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 TATDN3Q17R31 274 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 DEFB109BQ30KR1 87 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 GFOD2Q3B7J2 385 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 OR2W3Q7Z3T1 314 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 OR52N4Q8NGI2 321 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 OR4D6Q8NGJ1 314 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 UPRTQ96BW1 309 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 CACNG6Q9BXT2 260 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 SCPEP1Q9HB40 452 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 UPB1Q9UBR1 384 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 MTFP1Q9UDX5 166 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 LIPGQ9Y5X9 500 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 TRAV18A0A075B6X5 111 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 TCRBP04435 133 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 CSF1P09603 554 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 HOXD11P31277 338 aaPredicted RBP12.42□□□□□ -0.42
LIG3-205ENST00000585941 PRSS3P35030 304 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 EIF2B2P49770 351 aaKnown RBP12.42□□□□□ -0.42
LIG3-205ENST00000585941 GSK3AP49840 483 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 PLA2G7Q13093 441 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 RNFT1Q5M7Z0 435 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 OLFML2AQ68BL7 652 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 ZNF774Q6NX45 483 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 DPPA2Q7Z7J5 298 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 SKA3Q8IX90 412 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 ZNF100Q8IYN0 542 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 OR5AS1Q8N127 324 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 LYZL4Q96KX0 146 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 NUDT16L1Q9BRJ7 211 aaKnown RBP12.42□□□□□ -0.42
LIG3-205ENST00000585941 COL25A1Q9BXS0 654 aaPredicted RBP12.42□□□□□ -0.42
LIG3-205ENST00000585941 NEK6Q9HC98 313 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 GLRX2Q9NS18 164 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 FREM2Q5SZK8 3169 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 SLC22A20A6NK97 555 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 MMP7P09237 267 aaPredicted RBP12.41□□□□□ -0.42
LIG3-205ENST00000585941 PRF1P14222 555 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 ARF1P84077 181 aaKnown RBP12.41□□□□□ -0.42
LIG3-205ENST00000585941 NAA40Q86UY6 237 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 PNLDC1Q8NA58 520 aaKnown RBP12.41□□□□□ -0.42
LIG3-205ENST00000585941 UBASH3BQ8TF42 649 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 ITFG2Q969R8 447 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 FAM46BQ96A09 425 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 WNT5BQ9H1J7 359 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 HRASLSQ9HDD0 168 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 SPRR3Q9UBC9 169 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 GHRLQ9UBU3 117 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 KLK11Q9UBX7 282 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 KCNMB2Q9Y691 235 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 GVINP1Q7Z2Y8 2422 aa12.41□□□□□ -0.42
LIG3-205ENST00000585941 FAM186AA6NE01 2351 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 A0A0B4J293 547 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 HCKP08631 526 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 DBHP09172 617 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 COX5BP10606 129 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 GIFP27352 417 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 ACTBP60709 375 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 ACTG1P63261 375 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 AWAT2Q6E213 333 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 BTN2A1Q7KYR7 527 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 OR6F1Q8NGZ6 308 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 SLC7A6Q92536 515 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 CPNE2Q96FN4 548 aaPredicted RBP12.4□□□□□ -0.42
LIG3-205ENST00000585941 CHST5Q9GZS9 411 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 PRDM14Q9GZV8 571 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 ZNF221Q9UK13 617 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 ALG5Q9Y673 324 aa12.4□□□□□ -0.42
LIG3-205ENST00000585941 E9PLN8 166 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 KDM4BO94953 1096 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 MT-ND4P03905 459 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 LCATP04180 440 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 ARR3P36575 388 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 QRFPP83859 136 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 CD300CQ08708 224 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 PMPCAQ10713 525 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 MTFR2Q6P444 385 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 ASCL5Q7RTU5 278 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.39□□□□□ -0.43
LIG3-205ENST00000585941 FGD2Q7Z6J4 655 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 GLCCI1Q86VQ1 547 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 ANGPTL5Q86XS5 388 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 ZADH2Q8N4Q0 377 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 SEMA6DQ8NFY4 1073 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 OR56B4Q8NH76 319 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 AKR7LQ8NHP1 331 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 KCNG3Q8TAE7 436 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 SSC4DQ8WTU2 575 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 AKAP1Q92667 903 aaKnown RBP eCLIP12.39□□□□□ -0.43
LIG3-205ENST00000585941 GCDHQ92947 438 aaPredicted RBP12.39□□□□□ -0.43
LIG3-205ENST00000585941 SGK3Q96BR1 496 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 SOX7Q9BT81 388 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 NUDT15Q9NV35 164 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 ZNF107Q9UII5 783 aaPredicted RBP12.39□□□□□ -0.43
LIG3-205ENST00000585941 MRPS28Q9Y2Q9 187 aaKnown RBP12.39□□□□□ -0.43
LIG3-205ENST00000585941 CSAG2Q9Y5P2 127 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 ARHGAP21Q5T5U3 1957 aa12.39□□□□□ -0.43
LIG3-205ENST00000585941 TMEM14DPA8MWL7 114 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 AQP7O14520 342 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 XRCC2O43543 280 aa12.38□□□□□ -0.43
LIG3-205ENST00000585941 IGHV3-9P01782 118 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms