RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	NOP16	Q9Y3C1	178 aa	Known RBP	13.73	□□□□□ -0.21
ERBB2-222	ENST00000584908	WIPI2	Q9Y4P8	454 aa		13.73	□□□□□ -0.21
ERBB2-222	ENST00000584908	JMJD1C	Q15652	2540 aa		13.73	□□□□□ -0.21
ERBB2-222	ENST00000584908	hCG_38984	A0A1B0GV85	526 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	PRR32	B1ATL7	298 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	PHYH	O14832	338 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	GMDS	O60547	372 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	PTBP3	O95758	552 aa	Known RBP	13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	ZNF16	P17020	682 aa	Predicted RBP	13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	CD200	P41217	278 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	SRP9	P49458	86 aa	Known RBP	13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	CDH15	P55291	814 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	SNRPG	P62308	76 aa	Known RBP	13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	GABPB1	Q06547	395 aa	Predicted RBP	13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	ZSCAN26	Q16670	478 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	ZNF181	Q2M3W8	571 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	ZBTB49	Q6ZSB9	765 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	FAM57B	Q71RH2	274 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	KRT77	Q7Z794	578 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	KLB	Q86Z14	1044 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	FAM81A	Q8TBF8	368 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	EME1	Q96AY2	570 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	OR8B4	Q96RC9	309 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	SIGLEC11	Q96RL6	698 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	MBOAT4	Q96T53	435 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	MRO	Q9BYG7	248 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	OR10A2	Q9H208	303 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	YAE1D1	Q9NRH1	226 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	TMEM106B	Q9NUM4	274 aa		13.72	□□□□□ -0.21
ERBB2-222	ENST00000584908	GGT3P	A6NGU5	568 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908		F5H5P2	479 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	TBX1	O43435	398 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	CRLF1	O75462	422 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	HLA-DPB1	P04440	258 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	MAB21L1	Q13394	359 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	OR8B8	Q15620	311 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	TIGD6	Q17RP2	521 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	ZIK1	Q3SY52	487 aa	Predicted RBP	13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	FAM166A	Q6J272	317 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	SLC35F2	Q8IXU6	374 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	OR56B2P	Q8NGI1	322 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	RFK	Q969G6	155 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	ITFG2	Q969R8	447 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	ERGIC1	Q969X5	290 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	REEP6	Q96HR9	211 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	FAM206A	Q9NX38	181 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	TREM2	Q9NZC2	230 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	NPTN	Q9Y639	398 aa		13.71	□□□□□ -0.21
ERBB2-222	ENST00000584908	LOC100289279	A0A1B0GTE1	492 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	SRSF10	O75494	262 aa	Known RBP	13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	FSTL3	O95633	263 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	IGHV2-70	P01814	119 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	CA6	P23280	308 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	MMP16	P51512	607 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	CXCR4	P61073	352 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	MVK	Q03426	396 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	OCLN	Q16625	522 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	AVPI1	Q5T686	147 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	ZNF322	Q6U7Q0	402 aa	Predicted RBP	13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	KRT74	Q7RTS7	529 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	PEG10	Q86TG7	708 aa	Known RBP	13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	RFLNB	Q8N5W9	214 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	LINC01356	Q8N9X3	169 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	PLPP7	Q8NBV4	271 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	OR51G2	Q8NGK0	314 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908		Q8TCH9	128 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	UBE2F	Q969M7	185 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	PGAM5	Q96HS1	289 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	RDH12	Q96NR8	316 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	BRD7	Q9NPI1	651 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	IMPAD1	Q9NX62	359 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	DCAF16	Q9NXF7	216 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908	N6AMT1	Q9Y5N5	214 aa		13.7	□□□□□ -0.22
ERBB2-222	ENST00000584908		A0A0U1RQV5	110 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908		B4DSR2	109 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	ZNF670-ZNF695	F2Z2N8	137 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	TMEM178B	H3BS89	294 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	LMX1B	O60663	402 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	BAG2	O95816	211 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	IGHV2-5	P01817	119 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	OR2T7	P0C7T2	308 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	GABRB1	P18505	474 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	GSK3A	P49840	483 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	RIDA	P52758	137 aa	Known RBP	13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	EGR3	Q06889	387 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	OR8G1	Q15617	311 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	MEDAG	Q5VYS4	303 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	SPERT	Q8NA61	448 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	CSNK2A3	Q8NEV1	391 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	OR8B12	Q8NGG6	310 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	OR2T27	Q8NH04	317 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	ADAT1	Q9BUB4	502 aa	Known RBP	13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	NARFL	Q9H6Q4	476 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	ZNF665	Q9H7R5	613 aa		13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
ERBB2-222	ENST00000584908	TMEM269	A0A1B0GVZ9	245 aa		13.68	□□□□□ -0.22
ERBB2-222	ENST00000584908	FAM157A	C9JC47	383 aa		13.68	□□□□□ -0.22
ERBB2-222	ENST00000584908	PSMD9	O00233	223 aa		13.68	□□□□□ -0.22
ERBB2-222	ENST00000584908	DLGAP1	O14490	977 aa		13.68	□□□□□ -0.22
ERBB2-222	ENST00000584908	SLC16A6	O15403	523 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms