RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 APOL3O95236 402 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 IGHV2-70P01814 119 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 TNFRSF1AP19438 455 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 HOXA4Q00056 320 aaPredicted RBP16.95■□□□□ 0.3
SS18-218ENST00000581021 ROM1Q03395 351 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 FAM166AQ6J272 317 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 LINC01356Q8N9X3 169 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 OR8B12Q8NGG6 310 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 FAM81AQ8TBF8 368 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 EME1Q96AY2 570 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 LYZL4Q96KX0 146 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 LPAR2Q9HBW0 351 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 FAM206AQ9NX38 181 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 HAO2Q9NYQ3 351 aa16.95■□□□□ 0.3
SS18-218ENST00000581021 IGHV2-5P01817 119 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 RAD23AP54725 363 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 ZMYND11Q15326 602 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 TIGD6Q17RP2 521 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 GFOD2Q3B7J2 385 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 PRAMEF6Q5VXH4 476 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 IL17RELQ6ZVW7 336 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 SSX6Q7RTT6 188 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 KRT77Q7Z794 578 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 MOGAT3Q86VF5 341 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 GID4Q8IVV7 300 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 SLC35F2Q8IXU6 374 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 OR52H1Q8NGJ2 320 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 OR8J1Q8NGP2 316 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 RAB1CQ92928 201 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 PGAM5Q96HS1 289 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 HRASLS5Q96KN8 279 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 OR8B4Q96RC9 309 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 ADAT1Q9BUB4 502 aaKnown RBP16.94■□□□□ 0.3
SS18-218ENST00000581021 ZNF665Q9H7R5 613 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 MRPL15Q9P015 296 aaKnown RBP16.94■□□□□ 0.3
SS18-218ENST00000581021 AASSQ9UDR5 926 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 NPTNQ9Y639 398 aa16.94■□□□□ 0.3
SS18-218ENST00000581021 TMEM178BH3BS89 294 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 APOC1P02654 83 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 SBK2P0C263 348 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 ACKR3P25106 362 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 HTR1FP30939 366 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 CD200P41217 278 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 SRP9P49458 86 aaKnown RBP16.93■□□□□ 0.3
SS18-218ENST00000581021 MFGE8Q08431 387 aaPredicted RBP16.93■□□□□ 0.3
SS18-218ENST00000581021 MPPED2Q15777 294 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.93■□□□□ 0.3
SS18-218ENST00000581021 C10orf67Q8IYJ2 551 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 OR51G2Q8NGK0 314 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 TIMD4Q96H15 378 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 OR10A2Q9H208 303 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 OPA3Q9H6K4 179 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 TMEM160Q9NX00 188 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 KCNS2Q9ULS6 477 aa16.93■□□□□ 0.3
SS18-218ENST00000581021 ISPDA4D126 451 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 SRSF10O75494 262 aaKnown RBP16.92■□□□□ 0.3
SS18-218ENST00000581021 ZNF205O95201 554 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 PTBP3O95758 552 aaKnown RBP16.92■□□□□ 0.3
SS18-218ENST00000581021 CYB5R3P00387 301 aaPredicted RBP16.92■□□□□ 0.3
SS18-218ENST00000581021 GATA4P43694 442 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 GSK3AP49840 483 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 CXCR4P61073 352 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 SLC3A1Q07837 685 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 OR8G1Q15617 311 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 OR8B8Q15620 311 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 FAM201AQ5SY85 155 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 ZNF322Q6U7Q0 402 aaPredicted RBP16.92■□□□□ 0.3
SS18-218ENST00000581021 PLEKHG7Q6ZR37 379 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 WDR86Q86TI4 376 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 ZNF679Q8IYX0 411 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 PPP1R14AQ96A00 147 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 GAL3ST1Q99999 423 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 APOL4Q9BPW4 351 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 C9orf16Q9BUW7 83 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 CLN6Q9NWW5 311 aa16.92■□□□□ 0.3
SS18-218ENST00000581021 H2AFY2Q9P0M6 372 aaPredicted RBP16.92■□□□□ 0.3
SS18-218ENST00000581021 WARS2Q9UGM6 360 aaKnown RBP16.92■□□□□ 0.3
SS18-218ENST00000581021 MRM2Q9UI43 246 aaKnown RBP16.92■□□□□ 0.3
SS18-218ENST00000581021 B4DSR2 109 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 DLGAP1O14490 977 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 BAG2O95816 211 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 PNPP00491 289 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 CDC42P60953 191 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 BTG1P62324 171 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 FAM120AOSQ5T036 256 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 KCTD18Q6PI47 426 aaPredicted RBP16.91■□□□□ 0.3
SS18-218ENST00000581021 DEGS2Q6QHC5 323 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 ASB17Q8WXJ9 295 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 TBX5Q99593 518 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 NIPAL2Q9H841 368 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 SP140LQ9H930 580 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 IKZF2Q9UKS7 526 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 RHBDD3Q9Y3P4 386 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 ORC6Q9Y5N6 252 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 TMEM14AQ9Y6G1 99 aa16.91■□□□□ 0.3
SS18-218ENST00000581021 MXRA5Q9NR99 2828 aa16.9■□□□□ 0.3
SS18-218ENST00000581021 FAM20BO75063 409 aa16.9■□□□□ 0.3
SS18-218ENST00000581021 ENTPD6O75354 484 aa16.9■□□□□ 0.3
SS18-218ENST00000581021 MSMBP08118 114 aa16.9■□□□□ 0.3
SS18-218ENST00000581021 GABRB1P18505 474 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms