RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MRPL15Q9P015 296 aaKnown RBP20.1■□□□□ 0.81
SHMT1-206ENST00000579558 ATRQ13535 2644 aa20.1■□□□□ 0.81
SHMT1-206ENST00000579558 PHF1O43189 567 aaPredicted RBP20.09■□□□□ 0.81
SHMT1-206ENST00000579558 PRKYO43930 277 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 GATA4P43694 442 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 LCN2P80188 198 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 ZNF181Q2M3W8 571 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 LCN1P1Q5VSP4 162 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 PRSS45Q7RTY3 260 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 C1orf87Q8N0U7 546 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 MUC20Q8N307 709 aaPredicted RBP20.09■□□□□ 0.81
SHMT1-206ENST00000579558 REEP6Q96HR9 211 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 SEMA6AQ9H2E6 1030 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 PATZ1Q9HBE1 687 aaKnown RBP20.09■□□□□ 0.81
SHMT1-206ENST00000579558 KLHDC2Q9Y2U9 406 aa20.09■□□□□ 0.81
SHMT1-206ENST00000579558 A0A0G2JMP0 313 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 A0A0X1KG70 313 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 GMDSO60547 372 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 ZNF205O95201 554 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 IRF2P14316 349 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 PMELP40967 661 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 DCAF12L2Q5VW00 463 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 PRAMEF6Q5VXH4 476 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 SLX4IPQ5VYV7 408 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 SLC16A9Q7RTY1 509 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 OR4M2Q8NGB6 313 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 OR52H1Q8NGJ2 320 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 DVL3Q92997 716 aaPredicted RBP20.08■□□□□ 0.81
SHMT1-206ENST00000579558 ERGIC1Q969X5 290 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 SGK3Q96BR1 496 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 PGAM5Q96HS1 289 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 TEAD3Q99594 435 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 OR10A2Q9H208 303 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 UFSP2Q9NUQ7 469 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 ENOPH1Q9UHY7 261 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 LAMP5Q9UJQ1 280 aa20.08■□□□□ 0.81
SHMT1-206ENST00000579558 FBN1P35555 2871 aaKnown RBP20.08■□□□□ 0.8
SHMT1-206ENST00000579558 COL6A5A8TX70 2615 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 CCDC182A6NF36 153 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 ZAR1LA6NP61 321 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 RNF212BA8MTL3 300 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 M0R129 80 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 FOXH1O75593 365 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 MRPL3P09001 348 aaKnown RBP20.07■□□□□ 0.8
SHMT1-206ENST00000579558 EPHA2P29317 976 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 DDOSTP39656 456 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 GFOD2Q3B7J2 385 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 LRRN1Q6UXK5 716 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 OR11L1Q8NGX0 322 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 CENPNQ96H22 339 aaPredicted RBP20.07■□□□□ 0.8
SHMT1-206ENST00000579558 YIPF3Q9GZM5 350 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 OAZ3Q9UMX2 235 aa20.07■□□□□ 0.8
SHMT1-206ENST00000579558 ANKRD30BLA7E2S9 258 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 ALOX5APP20292 161 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 CFL1P23528 166 aaKnown RBP20.06■□□□□ 0.8
SHMT1-206ENST00000579558 HCCSP53701 268 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 FAM3AP98173 230 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 MPPED2Q15777 294 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 C12orf73Q69YU5 71 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 KRT77Q7Z794 578 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 TCEANCQ8N8B7 351 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 Q8TCH9 128 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 PYDC1Q8WXC3 89 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 CIB1Q99828 191 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 METTL17Q9H7H0 456 aaPredicted RBP20.06■□□□□ 0.8
SHMT1-206ENST00000579558 ZNF319Q9P2F9 582 aa20.06■□□□□ 0.8
SHMT1-206ENST00000579558 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-206ENST00000579558 hCG_38984A0A1B0GV85 526 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 CEACAM18A8MTB9 384 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 F5H0A9 414 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-206ENST00000579558 J3QLI3 93 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 FAM20BO75063 409 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 GATA3P23771 443 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 ZFP36P26651 326 aaKnown RBP20.05■□□□□ 0.8
SHMT1-206ENST00000579558 FAM201AQ5SY85 155 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 BCDIN3DQ7Z5W3 292 aaKnown RBP20.05■□□□□ 0.8
SHMT1-206ENST00000579558 KLBQ86Z14 1044 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 SPERTQ8NA61 448 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 TMEM158Q8WZ71 300 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 TMPRSS13Q9BYE2 586 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 NIPAL2Q9H841 368 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 FN3KRPQ9HA64 309 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 TMEM165Q9HC07 324 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 H2AFY2Q9P0M6 372 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-206ENST00000579558 METRNQ9UJH8 293 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 LRP12Q9Y561 859 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 ARHGAP32A7KAX9 2087 aa20.05■□□□□ 0.8
SHMT1-206ENST00000579558 PPIAL4EA0A075B759 164 aa20.04■□□□□ 0.8
SHMT1-206ENST00000579558 SAC3D1A6NKF1 404 aa20.04■□□□□ 0.8
SHMT1-206ENST00000579558 PPIAL4DF5H284 164 aa20.04■□□□□ 0.8
SHMT1-206ENST00000579558 PPIAL4FP0DN26 164 aa20.04■□□□□ 0.8
SHMT1-206ENST00000579558 PSMA6P60900 246 aaKnown RBP20.04■□□□□ 0.8
SHMT1-206ENST00000579558 ACTR3P61158 418 aa20.04■□□□□ 0.8
SHMT1-206ENST00000579558 SEC61A1P61619 476 aaKnown RBP20.04■□□□□ 0.8
SHMT1-206ENST00000579558 KPNB1Q14974 876 aaKnown RBP20.04■□□□□ 0.8
SHMT1-206ENST00000579558 ESCO2Q56NI9 601 aa20.04■□□□□ 0.8
SHMT1-206ENST00000579558 MEPCEQ7L2J0 689 aaKnown RBP20.04■□□□□ 0.8
SHMT1-206ENST00000579558 TEX29Q8N6K0 151 aa20.04■□□□□ 0.8
SHMT1-206ENST00000579558 TMEM163Q8TC26 289 aa20.04■□□□□ 0.8
SHMT1-206ENST00000579558 RGCCQ9H4X1 137 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms