RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PRSS57Q6UWY2 283 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 MYPOPQ86VE0 399 aaPredicted RBP9.72□□□□□ -0.85
CLK3-226ENST00000569406 OR1P1Q8NH06 330 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 RAB39BQ96DA2 213 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 PBDC1Q9BVG4 233 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 TMEM38AQ9H6F2 299 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 SYNPO2LQ9H987 977 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 TM7SF3Q9NS93 570 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 DOCK8Q8NF50 2099 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 HEATR5BQ9P2D3 2071 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 XKRY2A2RUG3 117 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 XKRYO14609 159 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 SLC6A11P48066 632 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 DGKGP49619 791 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 POLR2LP62875 67 aaKnown RBP9.72□□□□□ -0.85
CLK3-226ENST00000569406 MIDNQ504T8 468 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 ACSM3Q53FZ2 586 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 ZNF322Q6U7Q0 402 aaPredicted RBP9.72□□□□□ -0.85
CLK3-226ENST00000569406 STPG4Q8N801 248 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 OR51G2Q8NGK0 314 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 ABHD4Q8TB40 342 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 CASTOR1Q8WTX7 329 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 ARRDC3Q96B67 414 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 CMBLQ96DG6 245 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 MIEN1Q9BRT3 115 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 FNDC11Q9BVV2 318 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 DPEP2Q9H4A9 486 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 ZNF552Q9H707 407 aaPredicted RBP9.72□□□□□ -0.85
CLK3-226ENST00000569406 SNRNP200O75643 2136 aaKnown RBP9.72□□□□□ -0.85
CLK3-226ENST00000569406 CFAP54Q96N23 3096 aa9.72□□□□□ -0.85
CLK3-226ENST00000569406 KIR2DL5BA0A0G2JN68 375 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 KIR2DL5BA0A0G2JPC4 375 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 ELOA3DA6NLF2 546 aaPredicted RBP9.71□□□□□ -0.85
CLK3-226ENST00000569406 K7ERU9 68 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 SRPX2O60687 465 aaPredicted RBP9.71□□□□□ -0.85
CLK3-226ENST00000569406 NDUFB8O95169 186 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 APODP05090 189 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 GAS1P54826 345 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 HSF1Q00613 529 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 ZNF763Q0D2J5 394 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 UBE2NLQ5JXB2 153 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 COX20Q5RI15 118 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 KIR2DL5AQ8N109 375 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 EXD3Q8N9H8 876 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 SUMF2Q8NBJ7 301 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 TMEM234Q8WY98 164 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 YPEL4Q96NS1 127 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 OR5B2Q96R09 309 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 SLC7A7Q9UM01 511 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 WDFY3Q8IZQ1 3526 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 PRAMEF27A3QJZ7 478 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 GLSO94925 669 aaPredicted RBP9.71□□□□□ -0.85
CLK3-226ENST00000569406 PPP1R3DO95685 299 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 CHATP28329 748 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 RGNQ15493 299 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 UNQ5815/PRO19632Q6UWF5 114 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 BTNL8Q6UX41 500 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 GKN2Q86XP6 184 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 ZNF738Q8NE65 137 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 OR13D1Q8NGV5 346 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 ADAMTS18Q8TE60 1221 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 TMEM18Q96B42 140 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 S100A16Q96FQ6 103 aaKnown RBP9.71□□□□□ -0.85
CLK3-226ENST00000569406 REEP6Q96HR9 211 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 UTP23Q9BRU9 249 aaKnown RBP9.71□□□□□ -0.85
CLK3-226ENST00000569406 ZCCHC3Q9NUD5 404 aaKnown RBP9.71□□□□□ -0.85
CLK3-226ENST00000569406 RAB22AQ9UL26 194 aa9.71□□□□□ -0.85
CLK3-226ENST00000569406 DSPPQ9NZW4 1301 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 HLA-AP01891 365 aaKnown RBP9.71□□□□□ -0.86
CLK3-226ENST00000569406 F3P13726 295 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 PSMB6P28072 239 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 VIPR2P41587 438 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 TMEM240Q5SV17 173 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 OLIG3Q7RTU3 272 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 FAM219AQ8IW50 185 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 OR4K5Q8NGD3 323 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 OR2D3Q8NGH3 330 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 OR5W2Q8NH69 310 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 ADAMTS17Q8TE56 1095 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 ASB13Q8WXK3 278 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 CCDC3Q9BQI4 270 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 TTTY10Q9BZA0 68 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 PLEKHA1Q9HB21 404 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 FBXW2Q9UKT8 454 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 SRPK3Q9UPE1 567 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 KCNK6Q9Y257 313 aa9.71□□□□□ -0.86
CLK3-226ENST00000569406 A8MVM7 634 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 F8VVB4 439 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 F8VWA3 439 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 CYR61O00622 381 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 APOBEC3AP31941 199 aaPredicted RBP9.7□□□□□ -0.86
CLK3-226ENST00000569406 BDH1Q02338 343 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 RAB11BQ15907 218 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 RPTNQ6XPR3 784 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 GALNT16Q8N428 558 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 ZNF485Q8NCK3 441 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 ZNF740Q8NDX6 193 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 OR10H4Q8NGA5 316 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 TAF9BQ9HBM6 251 aa9.7□□□□□ -0.86
CLK3-226ENST00000569406 USP36Q9P275 1121 aaKnown RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms